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Subworkflow/bam generation #8

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Subworkflow/bam generation

Subworkflow/bam generation #8

Triggered via pull request October 9, 2023 14:47
@anoronh4anoronh4
synchronize #1
anoronh4:subworkflow/bam_generation
Status Failure
Total duration 5m 27s
Artifacts –

test.yml

on: pull_request
pytest-changes
6s
pytest-changes
prettier
15s
prettier
editorconfig
10s
editorconfig
Matrix: nf-core-lint
Matrix: pytest
confirm-pass
5s
confirm-pass
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8 errors and 6 warnings
pytest (subworkflows/bwa_markdup_bqsr, docker)
Process completed with exit code 1.
pytest (subworkflows/bwa_markdup_bqsr, docker)
Process completed with exit code 4.
nf-core-lint (subworkflows/bwa_markdup_bqsr)
Process completed with exit code 1.
pytest (subworkflows/bwa_markdup_bqsr, singularity)
Process completed with exit code 1.
pytest (subworkflows/bwa_markdup_bqsr, singularity)
Process completed with exit code 4.
pytest (subworkflows/bwa_markdup_bqsr, conda)
Process completed with exit code 1.
pytest (subworkflows/bwa_markdup_bqsr, conda)
Process completed with exit code 4.
confirm-pass
Process completed with exit code 1.
pytest (subworkflows/bwa_markdup_bqsr, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (subworkflows/bwa_markdup_bqsr, docker)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (subworkflows/bwa_markdup_bqsr, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7, actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (subworkflows/bwa_markdup_bqsr, singularity)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.
pytest (subworkflows/bwa_markdup_bqsr, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (subworkflows/bwa_markdup_bqsr, conda)
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work !/home/runner/pytest_workflow_*/*/work/conda !/home/runner/pytest_workflow_*/*/work/singularity !/home/runner/work/modules/modules/.singularity. No artifacts will be uploaded.