fix nf-core subworkflow lint issues

mskcc-omics-workflows · Oct 12, 2023 · 55f110e · 55f110e
1 parent 2c3f5a7
commit 55f110e
Showing 1 changed file with 4 additions and 4 deletions.
diff --git a/subworkflows/nf-core-test/bwa_markdup_bqsr/meta.yml b/subworkflows/nf-core-test/bwa_markdup_bqsr/meta.yml
@@ -1,4 +1,4 @@
-name: bam_markdup_bqsr
+name: bwa_markdup_bqsr
 description: A subworkflow for generating a BAM file from FASTQ
 keywords:
   - bam
@@ -13,9 +13,9 @@ components:
   - gatk4/applybqsr
   - gatk4/baserecalibrator
   - samtools/index
-  - gatk4/markduplicatesspark
-  - gatk4/applybqsrspark
-  - gatk4/baserecalibratorspark
+  - gatk4/markduplicates/spark
+  - gatk4/applybqsr/spark
+  - gatk4/baserecalibrator/spark
 
 input:
   - reads: