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Update test.yml
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Update for new modules schema
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rhshah committed Oct 4, 2024
1 parent df6b282 commit 976da55
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions .github/workflows/test.yml
Original file line number Diff line number Diff line change
Expand Up @@ -182,8 +182,8 @@ jobs:
python-version: "3.10"
- name: Download convertor from yml to md
run: |
curl -o ${{ github.workspace }}/yaml_to_md.py https://raw.githubusercontent.com/mskcc-omics-workflows/yaml_to_md/0.0.1/yaml_to_md.py
curl -o ${{ github.workspace }}/requirements.txt https://raw.githubusercontent.com/mskcc-omics-workflows/yaml_to_md/0.0.1/requirements.txt
curl -o ${{ github.workspace }}/yaml_to_md.py https://raw.githubusercontent.com/mskcc-omics-workflows/yaml_to_md/0.0.2/yaml_to_md.py
curl -o ${{ github.workspace }}/requirements.txt https://raw.githubusercontent.com/mskcc-omics-workflows/yaml_to_md/0.0.2/requirements.txt
- name: Give convertor permissions
run: chmod +x yaml_to_md.py
- name: Install python packages
Expand Down Expand Up @@ -227,7 +227,7 @@ jobs:
run: |
echo ${{ matrix.tags }}
echo ${{ env.FEATURE_TYPE }}
python ${{ github.workspace }}/yaml_to_md.py validate --yaml-file ${{ github.workspace }}/temp.yml --schema-url https://raw.githubusercontent.com/mskcc-omics-workflows/yaml_to_md/0.0.1/nextflow_schema/${{ env.FEATURE_TYPE }}/meta-schema.json
python ${{ github.workspace }}/yaml_to_md.py validate --yaml-file ${{ github.workspace }}/temp.yml --schema-url https://raw.githubusercontent.com/mskcc-omics-workflows/yaml_to_md/0.0.2/nextflow_schema/${{ env.FEATURE_TYPE }}/meta-schema.json
pytest:
runs-on: ubuntu-latest
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