Merge branch 'develop' into release/0.1.1

mskcc-omics-workflows · Aug 27, 2024 · c4f8cd8 · c4f8cd8
2 parents 77fa472 + 6c41849
commit c4f8cd8
Showing 1 changed file with 4 additions and 4 deletions.
diff --git a/modules/msk/ppflagfixer/tests/main.nf.test b/modules/msk/ppflagfixer/tests/main.nf.test
@@ -18,8 +18,8 @@ nextflow_process {
                     meta = [ id:'test' ] // meta map
                     input[0] = [
                                     meta,
-                                    file(params.test_data_mskcc['bam_files']['test_argos_sample_1_normal_bam'], checkIfExists: true),
-                                    file(params.test_data_mskcc['bam_files']['test_argos_sample_1_normal_bam_bai'], checkIfExists: true)
+                                    file(params.test_data_mskcc['argos']['test_argos_sample_1_normal_bam'], checkIfExists: true),
+                                    file(params.test_data_mskcc['argos']['test_argos_sample_1_normal_bam_bai'], checkIfExists: true)
                                 ]
                 """
             }
@@ -42,8 +42,8 @@ nextflow_process {
                     meta = [ id:'test' ] // meta map
                     input[0] = [
                                     meta,
-                                    file(params.test_data_mskcc['bam_files']['test_argos_sample_1_tumor_bam'], checkIfExists: true),
-                                    file(params.test_data_mskcc['bam_files']['test_argos_sample_1_tumor_bam_bai'], checkIfExists: true)
+                                    file(params.test_data_mskcc['argos']['test_argos_sample_1_tumor_bam'], checkIfExists: true),
+                                    file(params.test_data_mskcc['argos']['test_argos_sample_1_tumor_bam_bai'], checkIfExists: true)
                                 ]
                 """
             }