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modules.json
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modules.json
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{
"name": "mskcc/neoantigenpipeline",
"homePage": "https://github.com/mskcc/neoantigenpipeline",
"repos": {
"https://github.com/mskcc-omics-workflows/modules.git": {
"modules": {
"msk": {
"neoantigenediting/aligntoiedb": {
"branch": "develop",
"git_sha": "cac9c047e374ee259fb612ba5816e7e6aae6b86f",
"installed_by": ["neoantigen_editing"]
},
"neoantigenediting/computefitness": {
"branch": "develop",
"git_sha": "1f65c2ecdc5010549055ff7f4e6b8bccee48d4ae",
"installed_by": ["neoantigen_editing"]
},
"neoantigenutils/formatnetmhcpan": {
"branch": "develop",
"git_sha": "c5d1252252e15555abcc82ea537cebeb281a1856",
"installed_by": ["netmhcstabandpan"]
},
"neoantigenutils/generatehlastring": {
"branch": "develop",
"git_sha": "33f0bd33095fa15016ee24f4fb4d61e896dbb970",
"installed_by": ["netmhcstabandpan"]
},
"neoantigenutils/generatemutfasta": {
"branch": "develop",
"git_sha": "bb7975c796ab9a2d7a45ef733a6a226a0f5ad74a",
"installed_by": ["netmhcstabandpan"]
},
"neoantigenutils/neoantigeninput": {
"branch": "neoantigen",
"git_sha": "d66d3e2c7d132efe8bbde0c7e8a072b0f974b085",
"installed_by": ["modules"]
},
"netmhcpan": {
"branch": "develop",
"git_sha": "503abeb67260f060d8228221b07d743aa4180345",
"installed_by": ["modules", "netmhcstabandpan"]
},
"netmhcstabpan": {
"branch": "develop",
"git_sha": "c1a473f8bc08f778269a36ab62d5adf24357225f",
"installed_by": ["modules", "netmhcstabandpan"]
},
"phylowgs/createinput": {
"branch": "develop",
"git_sha": "b031249dcf4279606c25e626da2a628756e75e8a",
"installed_by": ["phylowgs"]
},
"phylowgs/multievolve": {
"branch": "develop",
"git_sha": "535662d391a3533dea3b11c462c14799227e08b2",
"installed_by": ["phylowgs"]
},
"phylowgs/parsecnvs": {
"branch": "develop",
"git_sha": "8471691d7c29bc2f5f4fb92279c94fb2640b6c38",
"installed_by": ["phylowgs"]
},
"phylowgs/writeresults": {
"branch": "develop",
"git_sha": "6d27f08bf649e8680ace321d3127dcdf0e210973",
"installed_by": ["phylowgs"]
}
}
},
"subworkflows": {
"msk": {
"neoantigen_editing": {
"branch": "develop",
"git_sha": "56a628201401866096d6307b9e8c690c5eb46ac2",
"installed_by": ["subworkflows"]
},
"netmhcstabandpan": {
"branch": "develop",
"git_sha": "d60211568e3709e9284bc06eef938e361d474d08",
"installed_by": ["subworkflows"]
},
"phylowgs": {
"branch": "develop",
"git_sha": "a5d61394af346f21ee2eb7ecfd97ab25bdbd1d0e",
"installed_by": ["subworkflows"]
}
}
}
},
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"multiqc": {
"branch": "master",
"git_sha": "b80f5fd12ff7c43938f424dd76392a2704fa2396",
"installed_by": ["modules"]
}
}
},
"subworkflows": {
"nf-core": {
"utils_nextflow_pipeline": {
"branch": "master",
"git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
"installed_by": ["subworkflows"]
},
"utils_nfcore_pipeline": {
"branch": "master",
"git_sha": "92de218a329bfc9a9033116eb5f65fd270e72ba3",
"installed_by": ["subworkflows"]
},
"utils_nfvalidation_plugin": {
"branch": "master",
"git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
"installed_by": ["subworkflows"]
}
}
}
}
}
}