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Feature/grain3d #2015

Merged
merged 426 commits into from
Sep 13, 2024
Merged

Feature/grain3d #2015

merged 426 commits into from
Sep 13, 2024

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ralfHielscher
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@ralfHielscher ralfHielscher commented Dec 15, 2023 •
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Implement full 3d support for MTEX

the following functions needs to be ported

pseudo3d EBSD

  • calcTraces
  • cat should return EBSD3 if pixels are not within a single plane
  • ebsdSquare and EBSDHex should return gradientZ
  • curvature should make use of gradientZ
  • fill
  • fillByGrainId
  • findByLocation
  • gridify should work also for maps in the xz and yz plane
  • inpolygon
  • interp
  • reduce
  • selectInteractive
  • smooth
  • spatialProfile
  • calcUnitCell
  • weightedBurgersVector

pseudo3d in grain2d

  • checkInside
  • inpolygon

EBSD3

  • calcGrains
  • calcTraces
  • fill
  • fillByGrainId
  • findByLocation
  • gridify
  • interp
  • KAM
  • plot
  • plotUnitCells
  • reduce
  • smooth
  • slice
  • weightedBurgersVec

*EBSDcube

grain3d

  • grain3Boundary/misorientation, grain3Boundary/ebsdId
  • docu
  • grain3dboundary plot (allow rgb, scalar value )
  • sample data set that can be loaded with mtexdata
  • boundary normal distribution
  • grain3d/slice - plane through 3 points
  • neper returns grain3d
  • select grain by mouse in 3d
  • fitEllipse
  • indexing should be possible with "phaseName"
  • grain3d/surface
  • grain3Boundary/curvature
  • grain3/hasHole
  • grain3/isConvex
  • grain3/convHull
  • rotate grain3, grain3boundary
  • intersection should not change the id
  • grain3/intersect
  • grain3/checkInside
  • grain3/neighbours, numNeighbours
  • simulateGrains should set correct symmetry

BjaJac and others added 5 commits November 20, 2023 18:13
@BjaJac
small fixes and docu
a32a78b
@BjaJac
first concept: slicing grain3d
5fb3201
@kilir
bug fix
a1e95af 
ensure that outer domain boundary is considered for larger window sizes, as well as make sure grain boundary pixels are considered symmetrically
@BjaJac
grain3d.slice and docu
62f48db
@BjaJac
bugfix
3a8c56e
@ralfHielscher ralfHielscher linked an issue Dec 15, 2023 that may be closed by this pull request
grain3d #1800
Closed
ralfHielscher and others added 24 commits December 22, 2023 13:01
@ralfHielscher
Merge branch 'develop' into feature/pseudo3d_EBSD
06c64f0 
# Conflicts:
#	EBSDAnalysis/@EBSD/calcGrains.m
#	EBSDAnalysis/@EBSD/fliplr.m
#	EBSDAnalysis/@EBSD/flipud.m
#	EBSDAnalysis/@EBSD/weightedBurgersVec.m
#	EBSDAnalysis/@EBSDhex/EBSDhex.m
#	EBSDAnalysis/@EBSDsquare/EBSDsquare.m
#	doc/GeneralConcepts/changelog.m
@ralfHielscher
resolve #1988
d8d0bf3
@BjaJac
copied from grain2d.load / readTessFile
3d5ee37 
(cherry picked from commit 88c75d0)
@BjaJac
cherry picked ! revised load function for grain2d
12427bf 
(cherry picked from commit 1f324bf)
@BjaJac
implementing option to provide ids for grain2d
e39a189
@BjaJac
grain2d.load returning original neper ids
85edb0c
@BjaJac
small improvements
221879b
@ralfHielscher
add ability to visualize plotting convention
3c6c06e
@BjaJac
small fix
b167ac9
@BjaJac
bugfix
da82d7a
@BjaJac
begin docu, standard dataset
968a21c
@BjaJac
bugfix
097eb8e
@BjaJac
small improvements
079b900
@BjaJac
Neper returns grains after simulation
d7fc72d
@ralfHielscher
bug fix
6de13b9
@ralfHielscher
spelling
3a32382
@ralfHielscher
minor
7ce5ac6
@ralfHielscher
work on
ab02fda
@ralfHielscher
added calcGBND
5223e44
@ralfHielscher
minor
adf7a96
@ralfHielscher
Merge branch 'feature/pseudo3d_EBSD' into feature/grain3d
99a8dd4 
# Conflicts:
#	EBSDAnalysis/@grain2d/load.m
#	EBSDAnalysis/@neperInstance/simulateGrains.m
#	interfaces/loadNeperTess.m
@ralfHielscher
minor
ae2fb3f
@ralfHielscher
added matGeom as submodule
a14e53f
@ralfHielscher
added surface for grain3d
1b3ee9d
@ralfHielscher
make the plottingConvention copyable
ab388f3
@ralfHielscher
fixes #2194
cb83544
@ralfHielscher
globally replace set and get commands by explicit assignments
759bc70
@ralfHielscher
globally replace bsxfun
13297ee
@ralfHielscher
bugfix in tensor/sym
3a51bbb
@ralfHielscher
bug fix
f6f6536
@ralfHielscher
calcGBND accepts also a misorientation
21f855f
@ralfHielscher
allow grain.area(5) for faster area computation
663d8e1
@ralfHielscher
minor
a593416
@ralfHielscher
some set / get fixes
e62a1cb
@ralfHielscher
minor speed up
a1f18c1
@ralfHielscher
bug fix
58090d0
@ralfHielscher
plot the spectra beginning with the zero order coeffient
965a543
@ralfHielscher
minor
64c32a4
@ralfHielscher
minor
e57b10c
@ralfHielscher
bug fix
947b63e
@ralfHielscher
very strange bug fix
22b801f
@ralfHielscher
bug fix
8588b1e
@ralfHielscher
bug fix
1553896
@ralfHielscher
minor
646b9cd
@ralfHielscher
sigma section respects plotting convention
614953b
@ralfHielscher
new antialiasing function
559d78c
@ralfHielscher
docu
5703320
@ralfHielscher
docu
8ab5636
@ralfHielscher
bug fix
f5563f5
@ralfHielscher
bug fix in grain reconstruction
8755414
@ralfHielscher
minor fic
126f998
@ralfHielscher
allow to plot colored crystal shapes
ab51a2f
@ralfHielscher
docu
9cc832c
@ralfHielscher ralfHielscher merged commit 3b94a6d into develop Sep 13, 2024
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grain3d
5 participants
@ralfHielscher @BjaJac @kilir @fjangfaragesh @vtvivian