Updating example csv & find_paths to match , usage

multinetlab-amsterdam · Apr 21, 2021 · 4607aea · 4607aea
1 parent a418e1d
commit 4607aea
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Showing 2 changed files with 4 additions and 3 deletions.
diff --git a/fooof/alternative_Compute_broadband.py b/fooof/alternative_Compute_broadband.py
@@ -100,7 +100,7 @@ def find_paths(main_dir, subject, extension, **kwargs):
                subject='mumo_002',
                extension='.asc',
                key1='OD1',
-               selection=['Tr01'])
+               selection=['Tr01', 'Tr04'])
 
     Returns
     -------
@@ -147,7 +147,8 @@ def find_paths(main_dir, subject, extension, **kwargs):
         elif key == 'selection':
             if isinstance(value, list):
                 selection = value
-            elif isinstance(value,str):
+            elif isinstance(value, str):
+                selection = selection.replace((';',',')) # Step that convert ; to , (used in example.csv)
                 selection = ast.literal_eval(value)
             assert isinstance(selection, list), 'Argument should end up being a list of Tr numbers strings'
             assert all(isinstance(item, str) for item in selection), 'Argument must be a list of of Tr numbers strings'

diff --git a/fooof/example_MEG_alternative.csv b/fooof/example_MEG_alternative.csv
@@ -1 +1 @@
-Path;Case_ID;MM;Atlas;Start;End;Selection/path/to/subjects/;subjectID;Timepoint;;1;5;/path/to/subjects/;subjectID;Timepoint;;;;['Tr01','Tr02','Tr03','Tr04','Tr05']
+Path,Case_ID,MM,Atlas,Start,End,Selection/path/to/subjects/,subjectID,Timepoint,,1,5,/path/to/subjects/,subjectID,Timepoint,,,,['Tr01';'Tr02';'Tr03';'Tr04';'Tr05']
Original file line number	Diff line number	Diff line change
		@@ -1 +1 @@
		Path;Case_ID;MM;Atlas;Start;End;Selection/path/to/subjects/;subjectID;Timepoint;;1;5;/path/to/subjects/;subjectID;Timepoint;;;;['Tr01','Tr02','Tr03','Tr04','Tr05']
		Path,Case_ID,MM,Atlas,Start,End,Selection/path/to/subjects/,subjectID,Timepoint,,1,5,/path/to/subjects/,subjectID,Timepoint,,,,['Tr01';'Tr02';'Tr03';'Tr04';'Tr05']
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