Merge branch 'master' into master

.github/workflows/productionintegration.yml

@@ -16,6 +16,7 @@ jobs:
     - name: Install dependencies
       run: |
         python -m pip install --upgrade pip
+
         pip install requests nose2
     - name: Test with Selenium
       run: |
@@ -56,4 +57,3 @@ jobs:
   #   - name: Test with Selenium
   #     run: |
   #       cd test-production-integration && export SERVER_URL="http://dorresteintesthub.ucsd.edu:5005" && nose2 -v test_selenium && cd ..
-

README.md

@@ -44,6 +44,7 @@ To simulate selenium and production integration tests:
 1. Check that graphs in Chemical Explorer are functional, available after clicking an example chemical's 'view assocations' button. (e.g. ```/compoundenrichmentdashboard?compound=Spectral%20Match%20to%20Sulfachloropyridazine%20from%20NIST14```)
 1. Test all buttons to ensure links are correct.
 
+
 ## Updating ReDU Data Procedure
 
 One of the key steps in ReDU is the updating of the database to include the latest identifications for files within ReDU. These are the following steps:

test-production-integration/test_selenium.py

@@ -4,7 +4,10 @@
 from selenium.webdriver.common.by import By
 from selenium.webdriver.common.action_chains import ActionChains
 from selenium.webdriver.support import expected_conditions as EC
+
 from selenium.webdriver.support.ui import WebDriverWait
+
+
 from selenium.webdriver.common.keys import Keys
 import unittest, time, re
 import os
@@ -14,20 +17,23 @@
 SERVER_URL = os.environ.get("SERVER_URL", "https://redu.ucsd.edu")
 
 class TestInterfaceready(unittest.TestCase):
+
     def setUp(self):    
         chrome_options = webdriver.ChromeOptions()
         chrome_options.add_argument('--no-sandbox')
         chrome_options.add_argument('--window-size=1420,1080')
         chrome_options.add_argument('--headless') 
         self.driver = webdriver.Chrome(options=chrome_options)
         self.driver.implicitly_wait(30)
+
 
     def tearDown(self):
         self.driver.quit()
 
     def test_compound_enrichment(self):
         #going to the page
         url = "{}/compoundenrichmentdashboard?compound=ESCITALOPRAM%20OXALATE".format(SERVER_URL)
+
 
         self.driver.get(url)
         time.sleep(1)
@@ -37,6 +43,7 @@ def test_compound_enrichment(self):
         wait.until(EC.visibility_of_element_located((By.ID,'querycompound')))
         #clicking the button
         python_button = self.driver.find_element_by_id('querycompound')
+
         python_button.click()
 
         try: