Bump miniconda GitHub action up to v3 #109
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python | |
| name: "Notebook Pipeline (Ubuntu)" | |
| on: | |
| pull_request: | |
| branches: | |
| - main | |
| - NG20 | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.8", "3.9", "3.10"] | |
| steps: | |
| - name: Install pdflatex | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install texlive-latex-base cm-super-minimal pdftk latex2html | |
| - uses: actions/checkout@v3 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| mamba-version: "*" | |
| channels: conda-forge,defaults | |
| channel-priority: true | |
| - name: Conda info | |
| shell: bash -el {0} | |
| run: conda info | |
| - name: Install Dependencies & Main Code | |
| shell: bash -el {0} | |
| run: | | |
| mamba install -c conda-forge python=${{ matrix.python-version }} pytest cython=0.29.36 tempo2 enterprise-pulsar enterprise_extensions scikit-sparse | |
| pip install -e . | |
| - name: Test with Standard Pulsar | |
| shell: bash -el {0} | |
| run: | | |
| export PULSAR_NAME='J0605+3757' | |
| export JUPYTER_PLATFORM_DIRS=1 && jupyter --paths | |
| tree tests | |
| pytest tests/test_run_notebook.py -n auto -k $PULSAR_NAME | |
| mv tmp-* nb_outputs | |
| - name: Archive Notebook Output Files | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: TestNB-OutputFiles | |
| path: | | |
| nb_outputs | |