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Converting to setup-micromamba@v1 #114

Converting to setup-micromamba@v1

Converting to setup-micromamba@v1 #114

Workflow file for this run

# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python
name: "Notebook Pipeline (Ubuntu)"
on:
pull_request:
branches:
- main
jobs:
build:
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest] #macos-13]
python-version: ["3.10"] #["3.8", "3.9", "3.10", "3.11", "3.12"]
steps:
- name: Install pdflatex
run: |
sudo apt-get update
sudo apt-get install texlive-latex-base cm-super-minimal pdftk latex2html
- uses: actions/checkout@v3
- uses: mamba-org/setup-micromamba@v1
with:
init-shell: bash
mamba-version: "latest"
environment-name: pulsar
create-args: >-
-c conda-forge
python=${{ matrix.python-version }}
pytest
cython
pint-pulsar
tempo2
enterprise-pulsar
enterprise_extensions
scikit-sparse
- name: Install Main Code
shell: micromamba shell {0}
run: |
pip install -e .
- name: Test with Standard Pulsar
shell: micromamba shell {0}
run: |
export PULSAR_NAME='J0605+3757'
export JUPYTER_PLATFORM_DIRS=1 && jupyter --paths
tree tests
pytest tests/test_run_notebook.py -n auto -k $PULSAR_NAME
ls -lah
mv tmp-* nb_outputs
- name: Archive Notebook Output Files
uses: actions/upload-artifact@v3
with:
name: TestNB-OutputFiles
path: |
nb_outputs