Converting to setup-micromamba@v1 #123
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python | |
| name: "Notebook Pipeline (Ubuntu)" | |
| on: | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] # Once we get the tex packages changed, we should include "macos-13" | |
| python-version: ["3.9", "3.10", "3.11", "3.12"] | |
| steps: | |
| - name: Install Required Ubuntu Packages | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install texlive-latex-base cm-super-minimal pdftk latex2html | |
| - uses: actions/checkout@v4 | |
| - uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| init-shell: bash | |
| environment-name: pulsar | |
| cache-environment: true | |
| cache-downloads: true | |
| create-args: >- | |
| -c conda-forge | |
| python=${{ matrix.python-version }} | |
| pytest | |
| cython | |
| pint-pulsar | |
| tempo2 | |
| libstempo | |
| enterprise-pulsar | |
| enterprise_extensions | |
| scikit-sparse | |
| scikit-learn | |
| ruamel.yaml | |
| nbconvert | |
| ipywidgets>=7.6.3 | |
| weasyprint | |
| pytest-xdist>=2.3.0 | |
| jupyter | |
| seaborn | |
| gitpython | |
| - name: Install Main Code | |
| shell: bash -el {0} | |
| run: | | |
| pip install -e . | |
| - name: Test with Standard Pulsar | |
| shell: bash -el {0} | |
| run: | | |
| export PULSAR_NAME='J0605+3757' | |
| export JUPYTER_PLATFORM_DIRS=1 | |
| pytest tests/test_run_notebook.py -k $PULSAR_NAME | |
| ls -lah | |
| mv tmp* nb_outputs | |
| - name: Archive Notebook Output Files | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: TestNB-OutputFiles_${{ matrix.python-version }}_${{ matrix.os }}_${{ steps.date.outputs.date }} | |
| path: | | |
| nb_outputs/*/*.pdf | |
| nb_outputs/*/*.tim | |
| nb_outputs/*/*.par | |
| compression-level: 6 | |