Update CI to use Official miniconda actions. #56
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# This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python | |
name: "Notebook Pipeline (Ubuntu)" | |
on: | |
pull_request: | |
branches: | |
- main | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: false | |
matrix: | |
python-version: ["3.8"] | |
steps: | |
- name: Install pdflatex | |
run: | | |
sudo apt-get update | |
sudo apt-get install texlive-latex-base pdftk latex2html | |
- uses: actions/checkout@v3 | |
- uses: conda-incubator/setup-miniconda@v2 | |
with: | |
python-version: ${{ matrix.python-version }} | |
mamba-version: "*" | |
channels: conda-forge,defaults | |
channel-priority: true | |
- name: Conda info | |
shell: bash -el {0} | |
run: conda info | |
- name: Install Dependencies & Main Code | |
shell: bash -el {0} | |
run: | | |
pip install --upgrade pip | |
pip install pytest | |
mamba install -c conda-forge python=${{ matrix.python-version }} cython=0.29.36 tempo2 scikit-sparse | |
pip install -e . | |
- name: Test with Standard Pulsar | |
shell: bash -el {0} | |
run: | | |
export PULSAR_NAME='J0605+3757' | |
export JUPYTER_PLATFORM_DIRS=1 && jupyter --paths | |
tree tests | |
pytest tests/test_run_notebook.py -n auto -k $PULSAR_NAME | |
mv tmp-* nb_outputs | |
- name: Archive Notebook Output Files | |
uses: actions/upload-artifact@v3 | |
with: | |
name: TestNB-OutputFiles | |
path: | | |
nb_outputs | |