-
-
cadd-software-list Public
computer-aided drug design(CADD) software list
MIT License UpdatedAug 19, 2024 -
CS-FEP_run Public
Forked from zlisysu/CS-FEP_runA demo of Combined structure free energy perturbation (CS-FEP) approach
Shell MIT License UpdatedJun 25, 2024 -
bisheng Public
Forked from dataelement/bishengBisheng is an open LLM devops platform for next generation AI applications.
Python Apache License 2.0 UpdatedMay 11, 2024 -
posebusters Public
Forked from maabuu/posebustersPlausibility checks for generated molecule poses.
Python BSD 3-Clause "New" or "Revised" License UpdatedMar 23, 2024 -
teachopencadd Public
Forked from volkamerlab/teachopencaddTeachOpenCADD: a teaching platform for computer-aided drug design (CADD) using open source packages and data
Jupyter Notebook Creative Commons Attribution 4.0 International UpdatedFeb 28, 2024 -
-
ChemFlow_py Public
Forked from IFMlab/ChemFlow_pyComputational toolbox for virtual High Throughput Screening
Python UpdatedJul 11, 2023 -
Vina-GPU-2.0 Public
Forked from DeltaGroupNJUPT/Vina-GPU-2.0Vina-GPU 2.0 accelerates AutoDock Vina and its related commonly derived docking methods, such as QuickVina 2 and QuickVina-W with GPUs.
C++ Apache License 2.0 UpdatedJul 7, 2023 -
AutoDock-Vina Public
Forked from ccsb-scripps/AutoDock-VinaAutoDock Vina
C++ Apache License 2.0 UpdatedJun 23, 2023 -
TDC Public
Forked from mims-harvard/TDCTherapeutics Data Commons: Artificial Intelligence Foundation for Therapeutic Science
Jupyter Notebook MIT License UpdatedMar 17, 2023 -
pdb-tools Public
Forked from haddocking/pdb-toolsA dependency-free cross-platform swiss army knife for PDB files.
Python Apache License 2.0 UpdatedNov 8, 2022 -
DenovoProfiling Public
DenovoProfiling: a webserver for de novo generated molecule library profiling.
-
pytorch-handbook Public
Forked from zergtant/pytorch-handbookpytorch handbook是一本开源的书籍,目标是帮助那些希望和使用PyTorch进行深度学习开发和研究的朋友快速入门,其中包含的Pytorch教程全部通过测试保证可以成功运行
Jupyter Notebook UpdatedMar 25, 2022 -
biopython Public
Forked from biopython/biopythonOfficial git repository for Biopython (originally converted from CVS)
Python Other UpdatedMar 15, 2022 -
generation-under-synthetic-constraint Public
Forked from iktos/generation-under-synthetic-constraintJupyter Notebook UpdatedMar 11, 2022 -
moses Public
Forked from molecularsets/mosesMolecular Sets (MOSES): A Benchmarking Platform for Molecular Generation Models
Python MIT License UpdatedJan 10, 2022 -
pdbfixer Public
Forked from openmm/pdbfixerPDBFixer fixes problems in PDB files
Python Other UpdatedNov 5, 2021 -
-
controlled-peptide-generation Public
Forked from IBM/controlled-peptide-generationsource code for https://arxiv.org/abs/2005.11248 "Accelerating Antimicrobial Discovery with Controllable Deep Generative Models and Molecular Dynamics"
Python Apache License 2.0 UpdatedApr 4, 2021 -
scaffold-constrained-generation Public
Forked from maxime-langevin/scaffold-constrained-generationJupyter Notebook UpdatedNov 10, 2020 -
SmilesPE Public
Forked from XinhaoLi74/SmilesPESMILES Pair Encoding: A data-driven substructure representation of chemicals
Jupyter Notebook Apache License 2.0 UpdatedMay 21, 2020 -
FastTargetPred Public
Forked from ludovicchaput/FastTargetPredTarget prediction
Python GNU General Public License v3.0 UpdatedMay 8, 2020 -
reinvent-scaffold-decorator Public
Forked from undeadpixel/reinvent-scaffold-decoratorA SMILES-based encoder-decoder architecture for molecular scaffold decoration
-
moo-denovo Public
Forked from alberdom88/moo-denovoAutomated de novo design of drug-like molecular libraries based on deep learning multi-objective optimization
Python UpdatedApr 29, 2020 -
forgeNet Public
Forked from yunchuankong/forgeNetforgeNet: FORest Graph-Embedded deep feedforward NETwork
Python MIT License UpdatedMar 17, 2020 -
microbiome_helper Public
Forked from LangilleLab/microbiome_helperA repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
Python GNU General Public License v3.0 UpdatedMar 16, 2020 -
amazon-sagemaker-examples Public
Forked from aws/amazon-sagemaker-examplesExample notebooks that show how to apply machine learning, deep learning and reinforcement learning in Amazon SageMaker
Jupyter Notebook Apache License 2.0 UpdatedFeb 19, 2020 -
biovec Public
Forked from kyu999/biovecA new approach for representing biological sequences
Python UpdatedFeb 14, 2020 -