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v0.3.7
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@iiSeymour iiSeymour released this 21 Apr 09:09
· 631 commits to master since this release
v0.3.7
d7c44d4

Improved R9.4.1 ([email protected]) and R10.3 ([email protected]) models for existing chemistries.

  • 9abea07 CRF models move to using a single blank score.
  • 3def77d non-uniform first chunk strategy instead of zero-padding.
  • 3342d1b Ability to call the reverse complement sequence.
  • 651b9c1 bonito export for converting models to guppy.
  • 9ac04dd upgrade to PyTorch 1.8.
  • 9739d6b read trimming.
  • ae221ca handle strings and bytes from h5py.
  • 6349f8d batch summary write to avoid performance degradation with slower output locations (i.e. NFS).

Note: with the upgrade to PyTorch 1.8 this release drops support for Python 3.5.

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