Adding single-read functionality to PROFILE #5
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| name: End-to-end MGS workflow test for single-end run | |
| on: [pull_request] | |
| jobs: | |
| test-run-dev-se: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 10 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Set up JDK 11 | |
| uses: actions/setup-java@v4 | |
| with: | |
| java-version: '11' | |
| distribution: 'adopt' | |
| - name: Setup Nextflow latest (stable) | |
| uses: nf-core/setup-nextflow@v1 | |
| with: | |
| version: "latest" | |
| - name: Install nf-test | |
| run: | | |
| wget -qO- https://get.nf-test.com | bash | |
| sudo mv nf-test /usr/local/bin/ | |
| - name: Run run_dev_se workflow | |
| run: nf-test test --tag run_dev_se --verbose |