Turns out we can use genera, just a valid one is necessary

naobservatory · Nov 20, 2024 · 1d41310 · 1d41310
1 parent c084e04
commit 1d41310
Showing 1 changed file with 4 additions and 1 deletion.
diff --git a/tests/nextflow.config b/tests/nextflow.config
@@ -31,7 +31,10 @@ params {
     // Kraken DB - https://benlangmead.github.io/aws-indexes/k2
     kraken_db = "https://genome-idx.s3.amazonaws.com/kraken/k2_viral_20240904.tar.gz" // Path to tarball containing Kraken reference DB
     blast_db_name = "nt_others"
-    ncbi_viral_params = "--section refseq --assembly-level complete"
+
+    // Can't do Circovirus, Anellovirus
+    // Works Betacoronavirus
+    ncbi_viral_params = "--section refseq --assembly-level complete --genera 'Rhinovirus'"
 
     // Other input values
     virus_taxid = "10239"