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I have a hunch
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harmonbhasin committed Nov 20, 2024
1 parent a961a6a commit 2a49acd
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions workflows/run.nf
Original file line number Diff line number Diff line change
Expand Up @@ -65,12 +65,12 @@ workflow RUN {
params_ch = Channel.of(params_str).collectFile(name: "run-params.json")
time_ch = Channel.of(start_time_str + "\n").collectFile(name: "time.txt")
version_ch = Channel.fromPath("${projectDir}/pipeline-version.txt")
index_params_ch = Channel.fromPath("${params.ref_dir}/input/index-params.json")
// index_params_ch = Channel.fromPath("${params.ref_dir}/input/index-params.json")
index_pipeline_version_ch = Channel.fromPath("${params.ref_dir}/logging/pipeline-version.txt")
.map { file -> file.copyTo("pipeline-version-index.txt") }
publish:
// Saved inputs
index_params_ch >> "input"
// index_params_ch >> "input"
index_pipeline_version_ch >> "logging"
Channel.fromPath(params.sample_sheet) >> "input"
Channel.fromPath(params.adapters) >> "input"
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