added end-to-end-se.yml

.github/workflows/end-to-end-se.yml

@@ -0,0 +1,32 @@
+name: End-to-end MGS workflow test for single-end run
+
+on: [pull_request]
+
+jobs:
+  test-run-dev-se:
+    runs-on: ubuntu-latest
+    timeout-minutes: 10
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+
+
+      - name: Set up JDK 11
+        uses: actions/setup-java@v4
+        with:
+          java-version: '11'
+          distribution: 'adopt'
+
+      - name: Setup Nextflow latest (stable)
+        uses: nf-core/setup-nextflow@v1
+        with:
+          version: "latest"
+
+      - name: Install nf-test
+        run: |
+          wget -qO- https://get.nf-test.com | bash
+          sudo mv nf-test /usr/local/bin/
+
+      - name: Run run_dev_se workflow
+        run: nf-test test --tag run_dev_se --verbose