Merge pull request #316 from nasa-fornax/fix-313

Fix path to nway.py in multiband_photometry 365270d

_sources/forced_photometry/multiband_photometry.md

@@ -115,6 +115,9 @@ except ImportError:
     print("tractor is missing")
     pass
 
+# Add ~/.local/bin to path so executables installed with pip are available (needed for nway)
+os.environ['PATH'] = f"{os.environ['HOME']}/.local/bin:{os.environ['PATH']}"
+
 
 %matplotlib inline
 ```
@@ -794,7 +797,7 @@ nway_write_header('data/multiband_phot.fits', 'OPT', float((2*rad_in_arcmin/60)*
 
 ```{code-cell} ipython3
 # call nway
-!/home/jovyan/.local/bin/nway.py 'data/Chandra/COSMOS_chandra.fits' :ERROR_RADIUS 'data/multiband_phot.fits' 0.1 --out=data/Chandra/chandra_multiband.fits --radius 15 --prior-completeness 0.9
+!nway.py 'data/Chandra/COSMOS_chandra.fits' :ERROR_RADIUS 'data/multiband_phot.fits' 0.1 --out=data/Chandra/chandra_multiband.fits --radius 15 --prior-completeness 0.9
 
 #!/opt/conda/bin/nway.py 'data/Chandra/COSMOS_chandra.fits' :ERROR_RADIUS 'data/multiband_phot.fits' 0.1 --out=data/Chandra/chandra_multiband.fits --radius 15 --prior-completeness 0.9
 ```

forced_photometry/multiband_photometry.html

@@ -574,6 +574,9 @@ <h2>Non-standard Dependencies<a class="headerlink" href="#non-standard-dependenc
     <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;tractor is missing&quot;</span><span class="p">)</span>
     <span class="k">pass</span>
 
+<span class="c1"># Add ~/.local/bin to path so executables installed with pip are available (needed for nway)</span>
+<span class="n">os</span><span class="o">.</span><span class="n">environ</span><span class="p">[</span><span class="s1">&#39;PATH&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;</span><span class="si">{</span><span class="n">os</span><span class="o">.</span><span class="n">environ</span><span class="p">[</span><span class="s1">&#39;HOME&#39;</span><span class="p">]</span><span class="si">}</span><span class="s2">/.local/bin:</span><span class="si">{</span><span class="n">os</span><span class="o">.</span><span class="n">environ</span><span class="p">[</span><span class="s1">&#39;PATH&#39;</span><span class="p">]</span><span class="si">}</span><span class="s2">&quot;</span>
+
 
 <span class="o">%</span><span class="n">matplotlib</span> <span class="n">inline</span>
 </pre></div>
@@ -1342,7 +1345,7 @@ <h3>4b. Run <code class="docutils literal notranslate"><span class="pre">nway</s
 <div class="cell docutils container">
 <div class="cell_input docutils container">
 <div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="c1"># call nway</span>
-<span class="err">!</span><span class="o">/</span><span class="n">home</span><span class="o">/</span><span class="n">jovyan</span><span class="o">/.</span><span class="n">local</span><span class="o">/</span><span class="nb">bin</span><span class="o">/</span><span class="n">nway</span><span class="o">.</span><span class="n">py</span> <span class="s1">&#39;data/Chandra/COSMOS_chandra.fits&#39;</span> <span class="p">:</span><span class="n">ERROR_RADIUS</span> <span class="s1">&#39;data/multiband_phot.fits&#39;</span> <span class="mf">0.1</span> <span class="o">--</span><span class="n">out</span><span class="o">=</span><span class="n">data</span><span class="o">/</span><span class="n">Chandra</span><span class="o">/</span><span class="n">chandra_multiband</span><span class="o">.</span><span class="n">fits</span> <span class="o">--</span><span class="n">radius</span> <span class="mi">15</span> <span class="o">--</span><span class="n">prior</span><span class="o">-</span><span class="n">completeness</span> <span class="mf">0.9</span>
+<span class="err">!</span><span class="n">nway</span><span class="o">.</span><span class="n">py</span> <span class="s1">&#39;data/Chandra/COSMOS_chandra.fits&#39;</span> <span class="p">:</span><span class="n">ERROR_RADIUS</span> <span class="s1">&#39;data/multiband_phot.fits&#39;</span> <span class="mf">0.1</span> <span class="o">--</span><span class="n">out</span><span class="o">=</span><span class="n">data</span><span class="o">/</span><span class="n">Chandra</span><span class="o">/</span><span class="n">chandra_multiband</span><span class="o">.</span><span class="n">fits</span> <span class="o">--</span><span class="n">radius</span> <span class="mi">15</span> <span class="o">--</span><span class="n">prior</span><span class="o">-</span><span class="n">completeness</span> <span class="mf">0.9</span>
 
 <span class="c1">#!/opt/conda/bin/nway.py &#39;data/Chandra/COSMOS_chandra.fits&#39; :ERROR_RADIUS &#39;data/multiband_phot.fits&#39; 0.1 --out=data/Chandra/chandra_multiband.fits --radius 15 --prior-completeness 0.9</span>
 </pre></div>