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nasa / GeneLab_Data_Processing Public

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Check typos

Fix broken reference database links #171

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Fix broken reference database links

Fix broken reference database links #171

Summary
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- Discover typos with codespell
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- Workflow file

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10 errors and 9 warnings

Run codespell-project/actions-codespell@master: Raw_Data_Generation/UPX_kit_for_bulk_RNAseq/Pipeline_GL-DPPD-7108_Versions/GL-DPPD-7108.md#L107

contining ==> containing, continuing

Run codespell-project/actions-codespell@master: Raw_Data_Generation/UPX_kit_for_bulk_RNAseq/Pipeline_GL-DPPD-7108_Versions/GL-DPPD-7108.md#L120

distrubution ==> distribution

Run codespell-project/actions-codespell@master: Raw_Data_Generation/UPX_kit_for_bulk_RNAseq/Pipeline_GL-DPPD-7108_Versions/GL-DPPD-7108.md#L121

distrubution ==> distribution

Run codespell-project/actions-codespell@master: Raw_Data_Generation/UPX_kit_for_bulk_RNAseq/Pipeline_GL-DPPD-7108_Versions/GL-DPPD-7108.md#L147

contining ==> containing, continuing

Run codespell-project/actions-codespell@master: Raw_Data_Generation/UPX_kit_for_bulk_RNAseq/Pipeline_GL-DPPD-7108_Versions/GL-DPPD-7108.md#L148

contining ==> containing, continuing

Run codespell-project/actions-codespell@master: Amplicon/Illumina/Workflow_Documentation/SW_AmpIllumina-A/workflow_code/Snakefile#L26

re-use ==> reuse

Run codespell-project/actions-codespell@master: Amplicon/Illumina/Workflow_Documentation/SW_AmpIllumina-A/workflow_code/config.yaml#L131

re-use ==> reuse

Run codespell-project/actions-codespell@master: Amplicon/Illumina/Workflow_Documentation/SW_AmpIllumina-B/README.md#L3

curently ==> currently

Run codespell-project/actions-codespell@master: Amplicon/Illumina/Workflow_Documentation/SW_AmpIllumina-B/examples/runsheet/paired_end_runsheet/GLDS-487_amplicon_v0_runsheet.csv#L17

heathy ==> healthy

Run codespell-project/actions-codespell@master: Amplicon/Illumina/Workflow_Documentation/SW_AmpIllumina-B/examples/runsheet/paired_end_runsheet/GLDS-487_amplicon_v0_runsheet.csv#L17

heathy ==> healthy

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run codespell-project/actions-codespell@master: Microarray/images/GL-microarray-overview.pdf#L1

Cannot decode file using encoding "utf-8"

Run codespell-project/actions-codespell@master: 3rd_Party_Licenses/Microarray_Affymetrix_3rd_Party_Software_Licenses/PYTHON_LICENSE.pdf#L1

Cannot decode file using encoding "utf-8"

Run codespell-project/actions-codespell@master: 3rd_Party_Licenses/Microarray_Affymetrix_3rd_Party_Software_Licenses/tibble_LICENSE.pdf#L1

Cannot decode file using encoding "utf-8"

Run codespell-project/actions-codespell@master: 3rd_Party_Licenses/Microarray_Agilent_1_Channel_3rd_Party_Software_Licenses/PYTHON_LICENSE.pdf#L1

Cannot decode file using encoding "utf-8"

Run codespell-project/actions-codespell@master: 3rd_Party_Licenses/Amplicon_and_Metagenomics_3rd_Party_Software_Licenses/kofam_scan_LICENSE.pdf#L1

Cannot decode file using encoding "utf-8"

Run codespell-project/actions-codespell@master: 3rd_Party_Licenses/RNAseq_3rd_Party_Software_Licenses/PYTHON_LICENSE.pdf#L1

Cannot decode file using encoding "utf-8"

Run codespell-project/actions-codespell@master: Licenses/Amplicon_and_Metagenomics_NOSA_License.pdf#L1

Cannot decode file using encoding "utf-8"

Run codespell-project/actions-codespell@master: Licenses/Microarray_GPL-3.0_with_Additional_Requirements_License.pdf#L1

Cannot decode file using encoding "utf-8"

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failed Dec 5, 2024 in 17s

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