GitHub - nathanieldchu/stacksanalyses: Scripts used in analyses of STACKS RAD assembly of pooled population data

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Scripts used in analyses of STACKS RAD assembly of pooled population data

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Name		Name	Last commit message	Last commit date
Latest commit History 9 Commits
IUPACwrapper.py		IUPACwrapper.py
NucleotideDivForPop.py		NucleotideDivForPop.py
README		README
bootstrapFSTsubset.py		bootstrapFSTsubset.py
extractfixedSNPs		extractfixedSNPs
fixedgradientsnps.py		fixedgradientsnps.py
fstbinomial.py		fstbinomial.py
fstfromnucdiv.py		fstfromnucdiv.py

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A series of analyses and data modification scripts to analyses STACKS output from pooled RAD population samples.
If you use any of these scripts, please cite the following publication:

Chu ND, Kalusiak ST, Trussell GC, and Vollmer SV. (in press) Phylogenomic analyses reveal latitudinal population structure and polymorphisms in heat stress genes in the North Atlantic snail Nucella lapillus. Molecular Ecology.