Skip to content
View navduhan's full-sized avatar

Organizations

@usubioinfo

Block or report navduhan

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
navduhan/README.md

Hi there πŸ‘‹ I'm Naveen Duhan

Website LinkedIn GitHub Google Scholar ResearchGate Email

About Me

I'm a Bioinformatics and Computational Biology professional with expertise in combining biology and big data analytics to support genomics-enabled research. Currently working as a Research Associate III in Bioinformatics at the Animal Disease Research & Diagnostic Laboratory, South Dakota State University.

πŸ”¬ Research Interests

  • Next Generation Sequencing (NGS) data analysis
  • Machine Learning in Bioinformatics
  • Genomics and Transcriptomics
  • Host-Pathogen Interactions
  • Computational Systems Biology

πŸ’» Technical Skills

  • Programming Languages: Python, R, Perl
  • Environments: Linux/Unix
  • NGS Analysis: Genome Assembly, RNA-Seq, Small RNA Sequencing, Digenome
  • Machine Learning: Deep Learning, Support Vector Machines, Neural Networks
  • Bioinformatics Tools: CLC Genomics, BLAST, InterProScan, Gene Ontology

πŸŽ“ Education

  • Ph.D. in Plant Sciences (Bioinformatics and Computational Biology)

    • Utah State University (2019-2023)
    • Thesis: Machine learning and Data mining in complex genomics big data: developing efficient tools to advance computational systems biology
  • M.Sc. in Bioinformatics

    • Punjabi University Patiala, India (2008-2010)
    • Thesis: In silico prediction of microRNA in Catharanthus roseus and their role in metabolomics

πŸ† Recent Achievements

  • Developed PRGminer: A deep learning tool for predicting resistance genes in plant defense mechanisms
  • Created HuCoPIA: An atlas of Human vs. SARS-CoV-2 Interactome
  • Multiple grants as Co-PI and Co-I for research in viral diseases and biosecurity
  • Published research in prestigious journals including Frontiers in Plant Science and Viruses

πŸ“Š GitHub Stats

GitHub Stats

πŸ“« Get in Touch

Feel free to reach out for collaborations or just a chat about bioinformatics and computational biology!


"Using computational approaches to unlock the secrets of life"

Popular repositories Loading

  1. pyseqrna pyseqrna Public

    pySeqRNA: a python-based package for RNASeq data analysis

    Python 2 3

  2. naveenduhan.com naveenduhan.com Public

    JavaScript

  3. pyseqrnaweb pyseqrnaweb Public

    JavaScript

  4. ranchbackend ranchbackend Public

    JavaScript

  5. tritikdb tritikdb Public

    JavaScript

  6. wheatbackend wheatbackend Public

    JavaScript