get_node_counts edit (#67)

* Grant Pipeline-New GARD Mapping Process * Change get_node_counts --------- Co-authored-by: Devon Joseph Leadman <[email protected]>
ncats · Jun 21, 2024 · b20fa3f · b20fa3f
1 parent 19be942
commit b20fa3f
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diff --git a/RDAS_GARD/methods.py b/RDAS_GARD/methods.py
@@ -384,7 +384,7 @@ def populate_node_counts(db,data,prop_name):
 
     res1 = db.run('MATCH (x:GARD)--(y:Phenotype) WITH COUNT(DISTINCT y) AS cnt,x SET x.COUNT_PHENOTYPES = cnt').data()
     res2 = db.run('MATCH (x:GARD)--(y:Gene) WITH COUNT(DISTINCT y) AS cnt,x SET x.COUNT_GENES = cnt').data()
-    res3 = ct_db.run('MATCH (x:GARD)--(y:Annotation)--(z:Condition)--(ct:ClinicalTrial) WITH COUNT(DISTINCT ct) AS cnt,x RETURN cnt AS cnt,x.GardId AS gard_id').data()
+    res3 = ct_db.run('MATCH (x:GARD)--(y:ConditionAnnotation)--(z:Condition)--(ct:ClinicalTrial) WITH COUNT(DISTINCT ct) AS cnt,x RETURN cnt AS cnt,x.GardId AS gard_id').data()
     res4 = pm_db.run('MATCH (x:GARD)--(y:Article) WITH COUNT(DISTINCT y) AS cnt,x RETURN cnt AS cnt, x.GardId AS gard_id').data()
     res5 = gnt_db.run('MATCH (x:GARD)--(y:Project)--(z:CoreProject) WITH COUNT(DISTINCT z) AS cnt,x RETURN cnt AS cnt, x.GardId as gard_id').data()
 

diff --git a/RDAS_PAKG/update.py b/RDAS_PAKG/update.py
@@ -25,5 +25,5 @@ def main (update_from=False, update_to=False):
     RDAS_PAKG.init.main(update_from=update_from, update_to=update_to)
 
 
-main() #TEST
+#main() #TEST
 #get_node_counts()