Merge pull request #335 from ncats/fix_example_config

changed config of example module to allow it to start up independently
ncats · May 22, 2024 · 172ad0b · 172ad0b
2 parents 68d6f2d + 9e285e0
commit 172ad0b
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Showing 2 changed files with 34 additions and 7 deletions.
diff --git a/gsrs-module-substance-example/pom.xml b/gsrs-module-substance-example/pom.xml
@@ -157,6 +157,12 @@
             <artifactId>gsrs-core-entities</artifactId>
             <version>${gsrs.version}</version>
         </dependency>
+        <dependency>
+            <groupId>gov.nih.ncats</groupId>
+            <artifactId>gsrs-module-substances-data-exchange</artifactId>
+            <version>${gsrs.substance.version}</version>
+        </dependency>
+
         <dependency>
             <groupId>org.mockito</groupId>
             <artifactId>mockito-junit-jupiter</artifactId>
@@ -327,12 +333,6 @@
             <version>0.4.0</version>
             <type>pom</type>
         </dependency>
-        <dependency>
-            <groupId>gov.nih.ncats</groupId>
-            <artifactId>gsrs-module-substances-data-exchange</artifactId>
-            <version>${gsrs.substance.version}</version>
-            <scope>test</scope>
-        </dependency>
         <!--dependency>
             <groupId>gov.nih.ncats</groupId>
             <artifactId>gsrs-core</artifactId>

diff --git a/gsrs-module-substance-example/src/main/resources/application.conf b/gsrs-module-substance-example/src/main/resources/application.conf
@@ -23,4 +23,31 @@ ix.authentication.logheaders=false
 
 #logging.level.org.hibernate.SQL=DEBUG
 #logging.level.org.hibernate.type.descriptor.sql.BasicBinder=TRACE
-logging.level.gsrs.module.substance.scrubbers.basic=trace
+logging.level.gsrs.module.substance.scrubbers.basic=trace
+
+gsrs.matchableCalculators.substances =
+[
+    {"matchableCalculationClass" : "gsrs.dataexchange.extractors.CASNumberMatchableExtractor",
+        "config" :{
+            "casCodeSystems": ["CAS", "CASNo", "CASNumber"]
+        }
+    },
+    {"matchableCalculationClass" : "gsrs.dataexchange.extractors.AllNamesMatchableExtractor","config" :{}},
+    {"matchableCalculationClass" : "gsrs.dataexchange.extractors.ApprovalIdMatchableExtractor","config" :{}},
+    {"matchableCalculationClass" : "gsrs.dataexchange.extractors.DefinitionalHashMatchableExtractor","config" :{}},
+    {"matchableCalculationClass" : "gsrs.dataexchange.extractors.SelectedCodesMatchableExtractor",
+        "config" :
+        {
+            "codeSystems" :["CAS", "ChemBL", "NCI", "NSC", "EINECS"]
+        }
+    },
+    {"matchableCalculationClass" : "gsrs.dataexchange.extractors.UUIDMatchableExtractor","config" :{}},
+    {"matchableCalculationClass" : "gsrs.dataexchange.extractors.CodeMatchableExtractor",
+        "config" :{
+            "reqCodeSystems": ["FDA UNII"],
+            "codeType": "PRIMARY",
+            "codeKey": "CODE"
+        }
+    }
+]
+