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@ncbi-nlp

NLM/NCBI BioNLP Research Group (PI: Zhiyong Lu)

These tools are the results of research conducted in the Computational Biology Branch, NLM/NCBI. More information about NLM/NCBI's disclaimer policy is availabl

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  1. BioSentVec BioSentVec Public

    BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences

    Jupyter Notebook 578 99

  2. bluebert bluebert Public

    BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).

    Python 558 78

  3. BLUE_Benchmark BLUE_Benchmark Public

    BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.

    Python 286 40

  4. NegBio NegBio Public

    📰 High-performance tool for negation and uncertainty detection in radiology reports

    Python 157 42

  5. BioWordVec BioWordVec Public

    Python 144 29

  6. DeepSeeNet DeepSeeNet Public

    👀 DeepSeeNet is a deep learning framework for classifying patient-based age-related macular degeneration severity in retinal color fundus photographs.

    Python 57 29

Repositories

Showing 10 of 33 repositories
  • MedCalc-Bench Public

    Benchmarking the medical calculation capabilities of large language models.

    ncbi-nlp/MedCalc-Bench’s past year of commit activity
    Python 25 4 0 0 Updated Nov 15, 2024
  • LLM-Medicine-Primer Public
    ncbi-nlp/LLM-Medicine-Primer’s past year of commit activity
    2 0 0 0 Updated Oct 24, 2024
  • Calculator-Recommendation Public

    MedCalcQA is a benchmarking dataset designed to assess the capability of LLMs to recommend clinical calculators

    ncbi-nlp/Calculator-Recommendation’s past year of commit activity
    Python 0 0 0 0 Updated Oct 22, 2024
  • deepseenet-plus Public
    ncbi-nlp/deepseenet-plus’s past year of commit activity
    Python 0 0 0 0 Updated Oct 14, 2024
  • Clinical-Tool-Learning Public
    ncbi-nlp/Clinical-Tool-Learning’s past year of commit activity
    Python 2 0 0 0 Updated Oct 9, 2024
  • EnzChemRED Public
    ncbi-nlp/EnzChemRED’s past year of commit activity
    0 0 0 0 Updated Sep 17, 2024
  • Unmasking-GPT-Bias Public
    ncbi-nlp/Unmasking-GPT-Bias’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Sep 4, 2024
  • TrialGPT Public

    Code and data for TrialGPT.

    ncbi-nlp/TrialGPT’s past year of commit activity
    Python 41 15 0 0 Updated Aug 15, 2024
  • PhenoTagger Public

    PhenoTagger

    ncbi-nlp/PhenoTagger’s past year of commit activity
    GAP 54 MIT 16 0 0 Updated Jan 24, 2024
  • TeamTat Public

    Text annotation tool for team collaboration

    ncbi-nlp/TeamTat’s past year of commit activity
    JavaScript 39 MIT 12 8 8 Updated Jan 10, 2024
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