importing ggraph

ncborcherding · Nov 8, 2023 · 3adf21d · 3adf21d
1 parent 9bd9486
commit 3adf21d
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Showing 5 changed files with 5 additions and 3 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -25,11 +25,11 @@ Imports:
     iNEXT,
     methods,
     plyr,
+    quantreg,
     Rcpp,
     reshape2,
     rjson,
     rlang,
-    rqss,
     S4Vectors,
     SeuratObject,
     SingleCellExperiment,

diff --git a/NAMESPACE b/NAMESPACE
@@ -86,6 +86,7 @@ importFrom(igraph,set_vertex_attr)
 importFrom(methods,slot)
 importFrom(plyr,join)
 importFrom(plyr,llply)
+importFrom(quantreg,rqss)
 importFrom(reshape2,dcast)
 importFrom(reshape2,melt)
 importFrom(rjson,fromJSON)

diff --git a/R/clonalBias.R b/R/clonalBias.R
@@ -42,7 +42,7 @@
 #' @param exportTable Returns the data frame used for forming the graph.
 #' @param palette Colors to use in visualization - input any \link[grDevices]{hcl.pals}.
 #' @import ggplot2
-#' @importClassesFrom quantreg rqss
+#' @importFrom quantreg rqss
 #' @importFrom stringr str_sort
 #' @export
 #' @concept SC_Functions

diff --git a/R/global.R b/R/global.R
@@ -42,5 +42,6 @@
     utils::globalVariables ("group.by")
     utils::globalVariables ("group")
     utils::globalVariables ("chain2_aa")
+    utils::globalVariables ("dotSize")
     invisible ()
 }
diff --git a/tests/testthat/test-clonalNetwork.R b/tests/testthat/test-clonalNetwork.R
@@ -3,7 +3,7 @@
 # library(ggraph) # Qile: I believe libraries shouldn't need to be loaded in scripts? Correct me if im wrong.
 
 test_that("clonalNetwork works", {
-
+  library(ggraph)
   data("scRep_example")
   test_obj <- combineExpression(getCombined(), scRep_example)