merge into devel #402
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merge into devel #402
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Relevel x axis
Prevent alphabetic reordering of samples on the plot
Update clonalQuant.R
Make intervals visible (colored)
Update clonalRarefaction.R
Several fixes
Fixed issue with clustering naming, adding manual and vignette info for clarification, updated testthat
Moving forward dev branch will not be a standalone branch, it will be used for pushing incrementral changes with version bumping
Called off.the.chain twice
Update combineExpression.R to allow for a custom clone definition
updating dev to start work
Fix 10X contigs filename
Use file.path() to build export file path
Small fix on where to update cloneCall and loop combined contigs
updated function to centralize aa counting
Update pkgdown page
no more row integer index, detect where the NA row is and use all the others.
small quality of life changes with assertthat
#394 as.vector() call to prevent confusion with factors
Version bump to match bioconductor
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