Merge pull request #313 from ncihtan/307-add-tst-as-valid-value-for-s…

…ingle-nucleus-buffer Add valid value for Single Nucleus Buffer
ncihtan · Oct 19, 2023 · 980eab4 · 980eab4
2 parents 79ea757 + 8632f39
commit 980eab4
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Showing 2 changed files with 21 additions and 1 deletion.
diff --git a/HTAN.model.csv b/HTAN.model.csv
@@ -306,7 +306,7 @@ Sequencing Platform,A platform is an object aggregate that is the set of instrum
 Technical Replicate Group,A common term for all files belonging to the same cell or library. Provide a numbering of each library prep batch (can differ from encapsulation and sequencing batch),,,,FALSE,Sequencing,,,
 Total Number of Input Cells,Number of cells loaded/placed on plates,,,,TRUE,Sequencing,,,
 Sequencing Batch ID,Links samples to a specific local sequencer run. Can be string or 'null',,,,TRUE,Sequencing,,,
-Single Nucleus Buffer,Nuclei isolation buffer,"NIB, 10x, Omni",,,TRUE,scATAC-seq Level 1,,,
+Single Nucleus Buffer,Nuclei isolation buffer,"NIB, 10x, Omni,TST",,,TRUE,scATAC-seq Level 1,,,
 Transposition Reaction,"Name of the transposase, transposon sequences","Tn5, EZ-Tn5, Tn5-059, Nextera Tn5, Diagenode-unloaded Apex-Bio, Diagenode-loaded Apex-Bio, In-House",,,TRUE,scATAC-seq Level 1,,,
 Read Length,"The length of the sequencing reads. Can be integer, null",,,,TRUE,Sequencing,,https://docs.gdc.cancer.gov/Data_Dictionary/viewer/#?view=table-definition-view&id=read_group,
 Target Capture Kit,"Description that can uniquely identify a target capture kit. Suggested value is a combination of vendor, kit name, and kit version.","Not Applicable, Custom Targets File Provided, Custom AmpliSeq Cancer Hotspot GENIE-MDA Augmented Panel v1 - 46 Genes, Custom GENIE-DFCI OncoPanel - 275 Genes, Custom GENIE-DFCI Oncopanel - 300 Genes, Custom GENIE-DFCI Oncopanel - 447 Genes, Custom HaloPlex DLBCL Panel - 370 Genes, Custom Ion AmpliSeq Hotspot GENIE-MOSC3 Augmented Panel - 74 Genes, Custom Large Construct Capture TARGET-OS Panel - 8 Genes, Custom MSK IMPACT Panel - 341 Genes, Custom MSK IMPACT Panel - 410 Genes, Custom MSK IMPACT Panel - 468 Genes, Custom Myeloid GENIE-VICC Panel - 37 Genes, Custom Personalis ACEcp VAREPOP-APOLLO Panel v2, Custom PGDX SureSelect CancerSelect VAREPOP-APOLLO Panel - 203 Genes, Custom PGDX SureSelect CancerSelect VAREPOP-APOLLO Panel - 88 Genes, Custom SeqCap EZ HGSC VCRome v2.1 ER Augmented v1, Custom SeqCap EZ HGSC VCRome v2.1 ER Augmented v2, Custom SeqCap EZ TARGET-OS Panel - 7.0 Mb, Custom Solid Tumor GENIE-VICC Panel - 34 Genes, Custom SureSelect CGCI-BLGSP Panel - 4.6 Mb, Custom SureSelect CGCI-HTMCP-CC KMT2D And Hotspot Panel - 37.0 Kb, Custom SureSelect CGCI-HTMCP-CC Panel - 19.7 Mb, Custom SureSelect GENIE-UHN Panel - 555 Genes, Custom SureSelect Human All Exon v1.1 Plus 3 Boosters, Custom SureSelect TARGET-AML_NBL_WT Panel - 2.8 Mb, Custom Twist Broad Exome v1.0 - 35.0 Mb, Custom Twist Broad PanCancer Panel - 396 Genes, Foundation Medicine T5a Panel - 322 Genes, Foundation Medicine T7 Panel - 429 Genes, Ion AmpliSeq Cancer Hotspot Panel v2, Ion AmpliSeq Comprehensive Cancer Panel, Nextera DNA Exome, Nextera Rapid Capture Exome v1.2, SeqCap EZ HGSC VCRome v2.1, SeqCap EZ Human Exome v2.0, SeqCap EZ Human Exome v3.0, SureSelect Human All Exon v3, SureSelect Human All Exon v4, SureSelect Human All Exon v5, SureSelect Human All Exon v5 + UTR, TruSeq Amplicon Cancer Panel, TruSeq Exome Enrichment - 62 Mb, TruSeq RNA Exome, TruSight Myeloid Sequencing Panel, xGen Exome Research Panel v1.0, xGen Universal Blocking Oligo – TS HT-i5 - 25 rxn, 25 rxn xGen Universal Blocking Oligo – TS HT-i7, unknown",,,TRUE,Sequencing,,,

diff --git a/HTAN.model.jsonld b/HTAN.model.jsonld
@@ -14619,6 +14619,9 @@
                 },
                 {
                     "@id": "bts:Omni"
+                },
+                {
+                    "@id": "bts:TST"
                 }
             ],
             "sms:displayName": "Single Nucleus Buffer",
@@ -56972,6 +56975,23 @@
             "sms:required": "sms:false",
             "sms:validationRules": []
         },
+        {
+            "@id": "bts:TST",
+            "@type": "rdfs:Class",
+            "rdfs:comment": "TBD",
+            "rdfs:label": "TST",
+            "rdfs:subClassOf": [
+                {
+                    "@id": "bts:SingleNucleusBuffer"
+                }
+            ],
+            "schema:isPartOf": {
+                "@id": "http://schema.biothings.io"
+            },
+            "sms:displayName": "TST",
+            "sms:required": "sms:false",
+            "sms:validationRules": []
+        },
         {
             "@id": "bts:Tn5",
             "@type": "rdfs:Class",