GitHub Action: convert *.model.csv to *.model.jsonld

ncihtan · Apr 29, 2024 · f87bf5e · f87bf5e
1 parent da1cf8a
commit f87bf5e
Showing 1 changed file with 0 additions and 102 deletions.
diff --git a/HTAN.model.jsonld b/HTAN.model.jsonld
@@ -44125,57 +44125,6 @@
             "sms:required": "sms:true",
             "sms:validationRules": []
         },
-        {
-            "@id": "bts:PanelName",
-            "@type": "rdfs:Class",
-            "rdfs:comment": "The human-readable panel name. This could be the Gene Panel name or Protein Panel name. In Xenium, this refers to the string entered as the name in panel specification (e.g. Xenium Human Immuno-Oncology Add-on B Gene Expression). In CosMx, this refers to the panel name as it appears in the CosMx catalog (e.g. CosMx Human Universal Cell Characterization Panel (1000-plex))",
-            "rdfs:label": "PanelName",
-            "rdfs:subClassOf": [
-                {
-                    "@id": "bts:SpatialTranscriptomics"
-                }
-            ],
-            "schema:isPartOf": {
-                "@id": "http://schema.biothings.io"
-            },
-            "sms:displayName": "Panel Name",
-            "sms:required": "sms:true",
-            "sms:validationRules": []
-        },
-        {
-            "@id": "bts:TotalNumberofCells",
-            "@type": "rdfs:Class",
-            "rdfs:comment": "The total number of cells analyzed on the flow cell",
-            "rdfs:label": "TotalNumberofCells",
-            "rdfs:subClassOf": [
-                {
-                    "@id": "bts:SpatialTranscriptomics"
-                }
-            ],
-            "schema:isPartOf": {
-                "@id": "http://schema.biothings.io"
-            },
-            "sms:displayName": "Total Number of Cells",
-            "sms:required": "sms:true",
-            "sms:validationRules": []
-        },
-        {
-            "@id": "bts:TotalNumberofTargets",
-            "@type": "rdfs:Class",
-            "rdfs:comment": "Refers to the target of an assay. Can be genes/transcripts or probes",
-            "rdfs:label": "TotalNumberofTargets",
-            "rdfs:subClassOf": [
-                {
-                    "@id": "bts:SpatialTranscriptomics"
-                }
-            ],
-            "schema:isPartOf": {
-                "@id": "http://schema.biothings.io"
-            },
-            "sms:displayName": "Total Number of Targets",
-            "sms:required": "sms:true",
-            "sms:validationRules": []
-        },
         {
             "@id": "bts:NumberofFOVs",
             "@type": "rdfs:Class",
@@ -44193,57 +44142,6 @@
             "sms:required": "sms:true",
             "sms:validationRules": []
         },
-        {
-            "@id": "bts:ExperimentIFChannels",
-            "@type": "rdfs:Class",
-            "rdfs:comment": "A comma-separated list with any number of channels the user deems appropriate(Example: PanCK, CD45, CD3, DAPI)",
-            "rdfs:label": "ExperimentIFChannels",
-            "rdfs:subClassOf": [
-                {
-                    "@id": "bts:SpatialTranscriptomics"
-                }
-            ],
-            "schema:isPartOf": {
-                "@id": "http://schema.biothings.io"
-            },
-            "sms:displayName": "Experiment IF Channels",
-            "sms:required": "sms:true",
-            "sms:validationRules": []
-        },
-        {
-            "@id": "bts:TranscriptsperCell",
-            "@type": "rdfs:Class",
-            "rdfs:comment": "Mean or Median transcript count per cell analyzed on the flow cell or slide",
-            "rdfs:label": "TranscriptsperCell",
-            "rdfs:subClassOf": [
-                {
-                    "@id": "bts:SpatialTranscriptomics"
-                }
-            ],
-            "schema:isPartOf": {
-                "@id": "http://schema.biothings.io"
-            },
-            "sms:displayName": "Transcripts per Cell",
-            "sms:required": "sms:true",
-            "sms:validationRules": []
-        },
-        {
-            "@id": "bts:PercentofTranscriptswithinCells",
-            "@type": "rdfs:Class",
-            "rdfs:comment": "The percentage of transcripts assigned to assayed cells",
-            "rdfs:label": "PercentofTranscriptswithinCells",
-            "rdfs:subClassOf": [
-                {
-                    "@id": "bts:SpatialTranscriptomics"
-                }
-            ],
-            "schema:isPartOf": {
-                "@id": "http://schema.biothings.io"
-            },
-            "sms:displayName": "Percent of Transcripts within Cells",
-            "sms:required": "sms:true",
-            "sms:validationRules": []
-        },
         {
             "@id": "bts:MeanTotalTranscriptsperArea",
             "@type": "rdfs:Class",