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add autominerva links
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@inodb
inodb committed Mar 23, 2022
1 parent d037730 commit b8f637f
Showing 1 changed file with 37 additions and 9 deletions.
46 changes: 37 additions & 9 deletions components/WPAtlasTable.tsx
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Original file line number Diff line number Diff line change
Expand Up @@ -109,9 +109,21 @@ const MinervaStoryViewerLink = (props: { url: string, count: number }) => (
<a
href={props.url}
target="_blank"
style={{paddingRight:5}}
style={{paddingRight:8,fontFamily:"monospace",textDecoration:"none"}}
>
<img width={20} src="https://user-images.githubusercontent.com/1334004/156241219-a3062991-ba9d-4201-ad87-3c9c1f0c61d8.png" /> ({props.count})
{props.count < 100 && '\u00A0'}{props.count < 10 && '\u00A0'}{props.count} <img width={20} src="https://user-images.githubusercontent.com/1334004/156241219-a3062991-ba9d-4201-ad87-3c9c1f0c61d8.png" />
</a>
</Tooltip>
);

const AutoMinervaViewerLink = (props: { url: string, count: number }) => (
<Tooltip overlay="Autominerva">
<a
href={props.url}
target="_blank"
style={{paddingRight:8,fontFamily:"monospace",textDecoration:"none"}}
>
{props.count < 100 && '\u00A0'}{props.count < 10 && '\u00A0'}{props.count} <img width={20} src="https://user-images.githubusercontent.com/1334004/159789346-b647c772-48fe-4652-8d2b-3eecf6690f1f.png" />
</a>
</Tooltip>
);
Expand All @@ -121,9 +133,9 @@ const CBioPortalViewerLink = (props: { url: string, count: number }) => (
<a
href={props.url}
target="_blank"
style={{paddingRight:5}}
style={{paddingRight:8,fontFamily:"monospace",textDecoration:"none"}}
>
<img width={20} src={'https://avatars.githubusercontent.com/u/9876251?s=20&v=4'} /> ({props.count})
{props.count < 100 && '\u00A0'}{props.count < 10 && '\u00A0'}{props.count} <img width={20} src={'https://avatars.githubusercontent.com/u/9876251?s=20&v=4'} />
</a>
</Tooltip>
);
Expand All @@ -133,9 +145,9 @@ const CellxgeneViewerLink = (props: { url: string, count: number }) => (
<a
href={props.url}
target="_blank"
style={{paddingRight:5}}
style={{paddingRight:8,fontFamily:"monospace",textDecoration:"none"}}
>
<img width={20} src={'https://pbs.twimg.com/profile_images/1285714433981812736/-wuBO62N_400x400.jpg'} /> ({props.count})
{props.count < 100 && '\u00A0'}{props.count < 10 && '\u00A0'}{props.count} <img width={20} src={'https://pbs.twimg.com/profile_images/1285714433981812736/-wuBO62N_400x400.jpg'} />
</a>
</Tooltip>
);
Expand Down Expand Up @@ -296,24 +308,40 @@ export default class WPAtlasTable extends React.Component<IWPAtlasTableProps> {
return (
<CellxgeneViewerLink url={'/explore?selectedFilters=%5B%7B"value"%3A"hdf5"%2C"label"%3A"hdf5"%2C"group"%3A"FileFormat"%2C"count"%3A11%2C"isSelected"%3Afalse%7D%2C%7B"group"%3A"AtlasName"%2C"value"%3A"HTAN+MSK"%7D%5D&tab=file'} count={11} />
);
} else if (atlas.htan_name === 'HTAN Duke') {
return (
<>
<AutoMinervaViewerLink url={'/explore?selectedFilters=%5B%7B"value"%3A"mIHC"%2C"label"%3A"mIHC"%2C"group"%3A"assayName"%2C"count"%3A62%2C"isSelected"%3Afalse%7D%2C%7B"value"%3A"t-CyCIF"%2C"label"%3A"t-CyCIF"%2C"group"%3A"assayName"%2C"count"%3A400%2C"isSelected"%3Afalse%7D%2C%7B"value"%3A"MIBI"%2C"label"%3A"MIBI"%2C"group"%3A"assayName"%2C"count"%3A165%2C"isSelected"%3Afalse%7D%2C%7B"value"%3A"IMC"%2C"label"%3A"IMC"%2C"group"%3A"assayName"%2C"count"%3A41%2C"isSelected"%3Afalse%7D%2C%7B"value"%3A"H%26E"%2C"label"%3A"H%26E"%2C"group"%3A"assayName"%2C"count"%3A254%2C"isSelected"%3Afalse%7D%2C%7B"value"%3A"CyCIF"%2C"label"%3A"CyCIF"%2C"group"%3A"assayName"%2C"count"%3A13%2C"isSelected"%3Afalse%7D%2C%7B"group"%3A"AtlasName"%2C"value"%3A"HTAN+Duke"%7D%5D&tab=file'} count={107} />
</>
);
} else if (atlas.htan_name === 'HTAN OHSU') {
return (
<>
<MinervaStoryViewerLink url={'https://minerva-story-htan-ohsu-demo.surge.sh/'} count={1} />
<CBioPortalViewerLink url={'https://www.cbioportal.org/patient?studyId=brca_hta9_htan_2022&caseId=HTA9_1'} count={1} />
<MinervaStoryViewerLink url={'https://minerva-story-htan-ohsu-demo.surge.sh/'} count={1} />
</>
);
} else if (atlas.htan_name === 'HTAN HMS') {
return (
<MinervaStoryViewerLink url={'/explore?selectedFilters=%5B%7B"group"%3A"AtlasName"%2C"value"%3A"HTAN+HMS"%7D%2C%7B"value"%3A"OME-TIFF"%2C"label"%3A"OME-TIFF"%2C"group"%3A"FileFormat"%2C"count"%3A16%2C"isSelected"%3Afalse%7D%5D&tab=file'} count={15} />
<AutoMinervaViewerLink url={'/explore?selectedFilters=%5B%7B"group"%3A"AtlasName"%2C"value"%3A"HTAN+HMS"%7D%2C%7B"value"%3A"OME-TIFF"%2C"label"%3A"OME-TIFF"%2C"group"%3A"FileFormat"%2C"count"%3A16%2C"isSelected"%3Afalse%7D%5D&tab=file'} count={348} />
);
} else if (atlas.htan_name === 'HTAN BU') {
return (
<CellxgeneViewerLink url={'https://cellxgene.cziscience.com/d/BFAA0C46-7E34-4FA9-B08C-6DC6013B735A.cxg/'} count={1} />
);
} else if (atlas.htan_name === 'HTAN Vanderbilt') {
return (
<CellxgeneViewerLink url={'https://cellxgene.cziscience.com/d/9899E3D8-ACE5-40BD-AC93-7AB7CE2AEC70.cxg/'} count={1} />
<>
<CellxgeneViewerLink url={'https://cellxgene.cziscience.com/d/9899E3D8-ACE5-40BD-AC93-7AB7CE2AEC70.cxg/'} count={1} />
<AutoMinervaViewerLink url={'/explore?selectedFilters=%5B%7B"value"%3A"H%26E"%2C"label"%3A"H%26E"%2C"group"%3A"assayName"%2C"count"%3A692%2C"isSelected"%3Afalse%7D%2C%7B"group"%3A"AtlasName"%2C"value"%3A"HTAN+Vanderbilt"%7D%5D&tab=file'} count={20} />
</>
);
} else if (atlas.htan_name === 'HTAN WUSTL') {
return (
<>
<CellxgeneViewerLink url={'https://cellxgene.cziscience.com/d/9899E3D8-ACE5-40BD-AC93-7AB7CE2AEC70.cxg/'} count={1} />
<AutoMinervaViewerLink url={'/explore?selectedFilters=%5B%7B"value"%3A"H%26E"%2C"label"%3A"H%26E"%2C"group"%3A"assayName"%2C"count"%3A692%2C"isSelected"%3Afalse%7D%2C%7B"group"%3A"AtlasName"%2C"value"%3A"HTAN+Vanderbilt"%7D%5D&tab=file'} count={20} />
</>
);
} else if (atlas.htan_name === 'HTAN CHOP') {
return (
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