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Issues list

Questions Regarding RERconverge Analysis and Gene Tree Estimation
#105 opened Dec 10, 2024 by aaannaw
Question about calculating Bayes Factor
#104 opened Dec 6, 2024 by vincentkaiheng
Issue with getAllResiduals, Mat::elem(): index out of bounds
#103 opened Dec 2, 2024 by erensy-sudo
3
foreground2TreeClades, getPermsBinary runs without error, no results are given for a long time
#101 opened Nov 13, 2024 by vincentkaiheng
2
Incorrect pseudorooting detected - use fixPseudoroot() function to correct trait tree topology
#100 opened Oct 10, 2024 by YanCheer
2
fastwilcoxGMTall with Goterms instead of pathways
#99 opened Sep 2, 2024 by MaximePolicarpo
2
How to get the RERs of ancestral nodes?
#98 opened Aug 16, 2024 by zhxh233
3
How to conduct tests for Phylogenetic Permutations of Binary Phenotypes with two ancestral branches?
#96 opened Jul 16, 2024 by YuantingGuo
can i provide a neutral tree with branch length as RERconverge master tree
#94 opened May 29, 2024 by shuifeng1988
2
whether RERconverge has to be used for converge ?
#92 opened May 6, 2024 by zhxh233
2
mamRERw result is NA
#91 opened Apr 5, 2024 by cjl200095
6
Ask a stupid question, where can i find the scripts in the NoncodingRegionWorkflow file
#90 opened Apr 4, 2024 by shuifeng1988
2
How to optimize parameters based on my current results?
#89 opened Mar 22, 2024 by zhxh233
2
not enough genes with all species present: master tree has no edge.lengths
#83 opened Jan 9, 2024 by chun-he-316
2
Trouble installing on Intel Core Mac
#82 opened Dec 5, 2023 by jules424
1
Trouble installing RERconverge on M1 mac
#79 opened Oct 5, 2023 by RishiDeKayne
3
Unable to load RERconverge on M1 Mac
#78 opened Jun 27, 2023 by MattChristmas
2
Error: Mat::elem(): index out of bounds
#76 opened Feb 6, 2023 by drabe004
2
binarize option not working correctly in the tree2Paths function
#75 opened Feb 3, 2023 by MichaelTene7
1
Differences between clade-based correlation and non-clade based correlations?
#74 opened Jan 13, 2023 by MichaelTene7
1
Update getPermsBinary with earlier non-numeric check
#72 opened Oct 20, 2022 by MichaelTene7
2
Permulations using tree2Paths()?
#71 opened Sep 29, 2022 by micahpf
2
Error when running getAllResiduals (incorrect pseudorooting)
#68 opened Apr 6, 2022 by laristide
2
Erro when using estimatePhangornTreeAll
#66 opened Jan 14, 2022 by ZhangXu-CAS
5
Can RERconverge handle gene trees with duplicates?
#64 opened Nov 22, 2021 by ghost
2
ProTip! Updated in the last three days: updated:>2025-01-14.