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Moved to corect location
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joshfactorial committed Sep 19, 2024
1 parent 288eec1 commit 19b74f0
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Showing 2 changed files with 10 additions and 10 deletions.
10 changes: 10 additions & 0 deletions neat/models/error_models.py
Original file line number Diff line number Diff line change
Expand Up @@ -107,6 +107,16 @@ def quality_index_remap(self, input_read_length, original_read_length):
return np.array([max([0, original_read_length * n // input_read_length]) for n in range(input_read_length)])


class MarkovModel:
def __init__(self):
# TODO
pass

def get_quality_scores(self):
# TODO
pass


class SequencingErrorModel(SnvModel, DeletionModel, InsertionModel, TraditionalModel):
"""
This is a SequencingErrorModel class, based on the old SequencingError. This covers both errors and quality
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10 changes: 0 additions & 10 deletions neat/models/models.py
Original file line number Diff line number Diff line change
Expand Up @@ -525,16 +525,6 @@ def get_quality_scores(self,
return temp_qual_array[:input_read_length]


class MarkovModel:
def __init__(self):
# TODO
pass

def get_quality_scores(self):
# TODO
pass


class ErrorContainer:
"""
Holds data for a single error
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