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wenzeslaus committed Nov 18, 2024
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8 changes: 5 additions & 3 deletions lectures/python-in-binder.html
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Expand Up @@ -62,7 +62,8 @@ <h3>Interaction: Jupyter</h3>
<li>alternatives:
<ul>
<li>RStudio, R Markdown
<li>other <em>notebooks</em> and <em>literate programing</em> tools
<li>Quarto</li>
<li>other <em>notebooks</em> and <em>literate programming</em> tools
</ul>
</ul>
<div class="right">
Expand Down Expand Up @@ -125,6 +126,7 @@ <h3>Binder Alternatives</h3>
<li>Requires sign in, notebook can access your Google Drive and credentials.
<li>Setup of the environment is part of the notebook.
</ul>
<li>The Whole Tale (funded by NSF)</li>
<li>HydroShare <small>(by CUAHSI, funded by NSF)</small></li>
<li>Pangeo <small>(funded by NSF, NASA, ...)</small></li>
<li>...
Expand All @@ -135,7 +137,7 @@ <h3>Binder Alternatives</h3>
<section>
<h3>Why Binder?</h3>
<ul>
<li>Community and long term project
<li>Community and long term project (Project Jupyter at NumFOCUS and cloud providers)
<li>Python, R, ...
<li>Similar concepts to RStudio Cloud, Code Ocean, ...
<li>Open source <small>(building blocks of Binder: JupyterHub, BinderHub, repo2docker)</small>
Expand All @@ -157,7 +159,7 @@ <h3>Why Binder?</h3>
<section>
<h3>Computational Environment: Docker</h3>
<ul>
<li>virtualization tool to wrap software with all its dependencies into one package
<li>virtualization tool to wrap software with all its dependencies into one package
<li>image is the software or binary, container is what is running
<li>enables to run many isolated computational environments
<li>open source software and related freemium platform
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2 changes: 1 addition & 1 deletion topics/open-science-for-grand-challenges.rst
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Expand Up @@ -140,7 +140,7 @@ Examples using Binder (25 min):

1. Hydrology and zonal statistics in GRASS GIS in JupyterLab

* https://mybinder.org/v2/gh/OSGeo/grass/8.2.0?urlpath=lab%2Ftree%2Fdoc%2Fnotebooks%2Fhydrology.ipynb
* https://mybinder.org/v2/gh/OSGeo/grass/8.4.0?urlpath=lab%2Ftree%2Fdoc%2Fnotebooks%2Fhydrology.ipynb
* Highlights: Included dataset, two different types of plotting (GRASS-specific and general Matplotlib)

1. Sudden Oak Death example for PoPS model in JupyterLab
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