The Jupyter notebook was created for the purpose of Exercise 2 in the course Genome Informatics. The goal is to read and extract specific information from the BAM file 'merged-tumor.bam'. The data is available as a part of Seven Bridges Genomics public cloud data.
| Total number of reads | Unmapped reads in the file | Reads with with mapping quality 0 | Average mapping quality |
|---|---|---|---|
| 2,921,629 | 17,765 | 126,628 | 55.91 |
To install necessary libraries, type in shell:
pip install -r requirements.txt