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update add_disease

update add_disease #74

Triggered via push July 16, 2024 12:38
Status Failure
Total duration 21m 3s
Artifacts 3

rworkflows.yml

on: push
Matrix: rworkflows
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21 errors and 10 warnings
windows-latest (auto)
Running examples in 'HPOExplorer-Ex.R' failed
windows-latest (auto)
R CMD check found ERRORs
windows-latest (auto)
Found cyclic nodes (paths are listed above). Set `remove_cyclic_paths =
windows-latest (auto)
Found cyclic nodes (paths are listed above). Set `remove_cyclic_paths =
windows-latest (auto)
Test failures
windows-latest (auto)
Process completed with exit code 1.
macOS-latest (auto)
No such keg: /opt/homebrew/Cellar/r
macOS-latest (auto)
Running examples in ‘HPOExplorer-Ex.R’ failed
macOS-latest (auto)
Found cyclic nodes (paths are listed above). Set `remove_cyclic_paths =
macOS-latest (auto)
Found cyclic nodes (paths are listed above). Set `remove_cyclic_paths =
macOS-latest (auto)
Test failures
macOS-latest (auto)
R CMD check found ERRORs
macOS-latest (auto)
Process completed with exit code 1.
ubuntu-latest (auto)
Input required and not supplied: path
ubuntu-latest (auto)
Process completed with exit code 1.
ubuntu-latest (auto)
[Workflow Telemetry] Unable to finish stat collector
ubuntu-latest (auto)
[Workflow Telemetry] Error
ubuntu-latest (auto)
Error: connect ECONNREFUSED 127.0.0.1:7777
ubuntu-latest (auto)
[Workflow Telemetry] Unable to report stat collector result
ubuntu-latest (auto)
[Workflow Telemetry] Error
ubuntu-latest (auto)
Error: connect ECONNREFUSED 127.0.0.1:7777
windows-latest (auto)
'::' or ':::' import not declared from: 'BiocParallel'
windows-latest (auto)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: runforesight/workflow-telemetry-action@v1, actions/cache@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
macOS-latest (auto)
pkg-config 0.29.2_3 is already installed and up-to-date. To reinstall 0.29.2_3, run: brew reinstall pkg-config
macOS-latest (auto)
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated dependents or dependents with broken linkage!
macOS-latest (auto)
harfbuzz 8.5.0 is already installed and up-to-date. To reinstall 8.5.0, run: brew reinstall harfbuzz
macOS-latest (auto)
macOS's Gatekeeper has been disabled for this Cask
macOS-latest (auto)
'::' or ':::' import not declared from: ‘BiocParallel’
macOS-latest (auto)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: runforesight/workflow-telemetry-action@v1, actions/cache@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
ubuntu-latest (auto)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: runforesight/workflow-telemetry-action@v1, actions/cache@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Deprecation notice: v1, v2, and v3 of the artifact actions
The following artifacts were uploaded using a version of actions/upload-artifact that is scheduled for deprecation: "Linux-biocversion-devel-r-auto-results", "macOS-biocversion-release-r-auto-results", "Windows-biocversion-release-r-auto-results". Please update your workflow to use v4 of the artifact actions. Learn more: https://github.blog/changelog/2024-04-16-deprecation-notice-v3-of-the-artifact-actions/

Artifacts

Produced during runtime
Name Size
Linux-biocversion-devel-r-auto-results Expired
10.1 MB
Windows-biocversion-release-r-auto-results Expired
10.1 MB
macOS-biocversion-release-r-auto-results Expired
10.1 MB