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Install quarto >= 1.5 to allow rendering qmd vignettes #173

Install quarto >= 1.5 to allow rendering qmd vignettes

Install quarto >= 1.5 to allow rendering qmd vignettes #173

Triggered via pull request July 25, 2024 21:39
Status Failure
Total duration 12m 49s
Artifacts 1

rworkflows.yml

on: pull_request
Matrix: rworkflows
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8 errors, 22 warnings, and 1 notice
macOS-latest (latest)
No such keg: /opt/homebrew/Cellar/r
ubuntu-latest (auto)
The deploy step encountered an error: The process '/usr/bin/git' failed with exit code 128 ❌
ubuntu-latest (auto)
[Workflow Telemetry] Unable to finish stat collector
ubuntu-latest (auto)
[Workflow Telemetry] Error
ubuntu-latest (auto)
Error: connect ECONNREFUSED 127.0.0.1:7777
ubuntu-latest (auto)
[Workflow Telemetry] Unable to report stat collector result
ubuntu-latest (auto)
[Workflow Telemetry] Error
ubuntu-latest (auto)
Error: connect ECONNREFUSED 127.0.0.1:7777
windows-latest (latest)
unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.4:
windows-latest (latest)
unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.4:
windows-latest (latest)
unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/bin/windows/contrib/4.4:
windows-latest (latest)
unable to access index for repository https://bioconductor.org/packages/3.18/workflows/bin/windows/contrib/4.4:
windows-latest (latest)
unable to access index for repository https://bioconductor.org/packages/3.18/books/bin/windows/contrib/4.4:
windows-latest (latest)
unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.4:
windows-latest (latest)
unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.4:
windows-latest (latest)
unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/bin/windows/contrib/4.4:
windows-latest (latest)
unable to access index for repository https://bioconductor.org/packages/3.18/workflows/bin/windows/contrib/4.4:
windows-latest (latest)
unable to access index for repository https://bioconductor.org/packages/3.18/books/bin/windows/contrib/4.4:
macOS-latest (latest)
pkg-config 0.29.2_3 is already installed and up-to-date. To reinstall 0.29.2_3, run: brew reinstall pkg-config
macOS-latest (latest)
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated dependents or dependents with broken linkage!
macOS-latest (latest)
unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/macosx/big-sur-arm64/contrib/4.4:
macOS-latest (latest)
unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/bin/macosx/big-sur-arm64/contrib/4.4:
macOS-latest (latest)
unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/bin/macosx/big-sur-arm64/contrib/4.4:
macOS-latest (latest)
unable to access index for repository https://bioconductor.org/packages/3.18/workflows/bin/macosx/big-sur-arm64/contrib/4.4:
macOS-latest (latest)
unable to access index for repository https://bioconductor.org/packages/3.18/books/bin/macosx/big-sur-arm64/contrib/4.4:
macOS-latest (latest)
unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/macosx/big-sur-arm64/contrib/4.4:
macOS-latest (latest)
unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/bin/macosx/big-sur-arm64/contrib/4.4:
macOS-latest (latest)
unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/bin/macosx/big-sur-arm64/contrib/4.4:
ubuntu-latest (auto)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: runforesight/workflow-telemetry-action@v1, actions/cache@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Deprecation notice: v1, v2, and v3 of the artifact actions
The following artifacts were uploaded using a version of actions/upload-artifact that is scheduled for deprecation: "Linux-biocversion-release-r-auto-results". Please update your workflow to use v4 of the artifact actions. Learn more: https://github.blog/changelog/2024-04-16-deprecation-notice-v3-of-the-artifact-actions/
ubuntu-latest (auto)
Deployment failed! ❌

Artifacts

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Linux-biocversion-release-r-auto-results Expired
6.11 MB