Dont use libcurl in Dockerfile

neurogenomics · Nov 17, 2023 · 4a4a612 · 4a4a612
1 parent 2780ad8
commit 4a4a612
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/action.yml b/action.yml
@@ -455,7 +455,7 @@ runs:
     - name: ℹ️ Get R package info 
       if: runner.os == 'Linux'
       run: |
-        #### DockerHub repos must be lowercase (,,) ####
+        #### DockerHub repos must be lowercase (,,) #### 
         name=$(grep '^Package:' DESCRIPTION | cut -d\   -f2)
         echo "packageName=${name,,}" >> $GITHUB_ENV
         echo "packageNameOrig=${name}" >> $GITHUB_ENV 

diff --git a/inst/templates/Dockerfile b/inst/templates/Dockerfile
@@ -18,7 +18,7 @@ RUN Rscript -e 'if(!require("remotes")) install.packages("remotes"); \
 RUN sysreqs=$(Rscript -e 'rworkflows::dependencies_linux()') \ 
     sudo -s eval "$sysreqs"
 #### --Step 5--:Install package dependencies ####
-RUN Rscript -e 'options(download.file.method="libcurl", crayon.enabled=TRUE, timeout={TIMEOUT}); \ 
+RUN Rscript -e 'options(crayon.enabled=TRUE, timeout={TIMEOUT}); \ 
                 if(!require("BiocManager",quietly=TRUE)) install.packages("BiocManager"); \ 
                 repos <- BiocManager::repositories(); \ 
                 remotes::install_local(repos=repos, dependencies=TRUE, build_vignettes=FALSE, upgrade=TRUE, force=TRUE);'