Accept paper #9
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| name: Accept paper | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| repository_url: | |
| description: 'URL of the repository containing the paper file' | |
| required: true | |
| branch: | |
| description: 'Git branch where the paper Markdown file is' | |
| required: false | |
| issue_id: | |
| description: 'The issue number of the submission' | |
| required: true | |
| add_labels: | |
| description: 'Labels to add to the issue after successful run' | |
| required: false | |
| default: '' | |
| jobs: | |
| acceptance-and-publishing: | |
| name: ${{ format('Accepting paper in issue {0}', github.event.inputs.issue_id) }} | |
| runs-on: ubuntu-latest | |
| env: | |
| GH_ACCESS_TOKEN: ${{ secrets.BOT_TOKEN }} | |
| GITHUB_TOKEN: ${{ secrets.BOT_TOKEN }} | |
| GH_REPO: neurolibre/neurolibre-reviews | |
| ISSUE_ID: ${{ github.event.inputs.issue_id }} | |
| DEFAULT_ERROR: ":warning: Couldn't acccept/publish paper. [An error happened](https://github.com/${{ github.repository }}/actions/runs/${{ github.run_id }}?check_suite_focus=true)." | |
| steps: | |
| - name: Compile Paper | |
| id: generate-files | |
| uses: neurolibre/paper-action@main | |
| with: | |
| repository_url: ${{ github.event.inputs.repository_url }} | |
| branch: ${{ github.event.inputs.branch }} | |
| issue_id: ${{ github.event.inputs.issue_id }} | |
| journal: neurolibre | |
| compile_mode: accepted | |
| - name: Upload files to papers repo | |
| id: upload-files | |
| uses: neurolibre/upload-files-action@main | |
| with: | |
| papers_repo: neurolibre/preprints | |
| branch_prefix: neurolibre | |
| issue_id: ${{ github.event.inputs.issue_id }} | |
| pdf_path: ${{ steps.generate-files.outputs.pdf_path}} | |
| jats_path: ${{ steps.generate-files.outputs.jats_path}} | |
| crossref_path: ${{ steps.generate-files.outputs.crossref_path}} | |
| - name: Validate metadata files | |
| id: validate-xml | |
| uses: xuanxu/validate-xml-files-action@main | |
| with: | |
| jats_path: ${{ steps.generate-files.outputs.jats_path}} | |
| crossref_path: ${{ steps.generate-files.outputs.crossref_path}} | |
| validation_mode: strict | |
| - name: Create and Merge Pull Request | |
| id: pull-request | |
| uses: neurolibre/deposit-pull-request-action@main | |
| with: | |
| papers_repo: neurolibre/preprints | |
| papers_repo_main_branch: master | |
| branch_prefix: neurolibre | |
| issue_id: ${{ github.event.inputs.issue_id }} | |
| bot_token: ${{ secrets.BOT_TOKEN }} | |
| mode: deposit | |
| - name: Deposit with Crossref | |
| uses: neurolibre/deposit-with-crossref-action@main | |
| with: | |
| crossref_filepath: ${{ steps.generate-files.outputs.crossref_path}} | |
| crossref_username: ${{ secrets.CROSSREF_USERNAME }} | |
| crossref_password: ${{ secrets.CROSSREF_PASSWORD }} | |
| - name: Deposit with NeuroLibre | |
| id: neurolibre-deposit | |
| uses: neurolibre/deposit-with-neurolibre-action@main | |
| with: | |
| journal_alias: neurolibre | |
| journal_secret: ${{ secrets.JOURNAL_SECRET }} | |
| issue_id: ${{ github.event.inputs.issue_id }} | |
| paper_path: ${{ steps.generate-files.outputs.paper_file_path}} | |
| - name: Citation.cff file info | |
| uses: xuanxu/citation-file-action@main | |
| with: | |
| citation_file_path: ${{ steps.generate-files.outputs.citation_file_path}} | |
| issue_id: ${{ github.event.inputs.issue_id }} | |
| reviews_repo: neurolibre/neurolibre-reviews | |
| gh_token: ${{ secrets.BOT_TOKEN }} | |
| - name: Reply message | |
| if: ${{ success() }} | |
| run: | | |
| gh issue comment ${{ github.event.inputs.issue_id }} --body "🌰🌱🌺 **THIS IS NOT A DRILL, YOU HAVE JUST PUBLISHED A NEUROLIBRE REPRODUCIBLE PREPRINT!** 🌺🌸🍀 | |
| Here's what you must now do: | |
| 0. Check final PDF and Crossref metadata that was deposited :point_right: ${{steps.pull-request.outputs.pr_url}} | |
| 1. Wait a couple of minutes, then verify that the paper DOI resolves [https://doi.org/${{steps.oj-deposit.outputs.paper_doi}}](https://doi.org/${{steps.oj-deposit.outputs.paper_doi}}) | |
| 2. If everything looks good, then close this review issue. | |
| 3. Party like you just published more than a PDF! 🎉🌈🦄💃👻🤘 | |
| Any issues? Notify your editorial technical team..." | |
| - name: Labeling | |
| if: ${{ success() && github.event.inputs.add_labels != '' }} | |
| run: gh issue edit ${{ github.event.inputs.issue_id }} --add-label ${{ github.event.inputs.add_labels }} | |
| - name: Error message | |
| if: ${{ failure() && env.CUSTOM_ERROR_STATUS != 'sent' }} | |
| run: | | |
| gh issue comment ${{ github.event.inputs.issue_id }} --body "${{ env.DEFAULT_ERROR }} ${{ env.CUSTOM_ERROR }}" |