Merge branch 'master' into workflow-output-dsl

Signed-off-by: Paolo Di Tommaso <[email protected]>
nextflow-io · May 12, 2024 · f54b6c8 · f54b6c8
2 parents f8957dd + fe97300
commit f54b6c8
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Showing 3 changed files with 13 additions and 4 deletions.
diff --git a/main.nf b/main.nf
@@ -24,6 +24,7 @@
  * enables modules 
  */
 nextflow.enable.dsl = 2
+
 nextflow.preview.output = true
 
 /*

diff --git a/modules/rnaseq.nf b/modules/rnaseq.nf
@@ -16,4 +16,7 @@ workflow RNASEQ {
 
   emit: 
      QUANT.out | concat(FASTQC.out) | collect
-}
+
+  publish:
+    FASTQC.out >> '.'
+}
diff --git a/nextflow.config b/nextflow.config
@@ -13,7 +13,7 @@
 manifest {
   description = 'Proof of concept of a RNA-seq pipeline implemented with Nextflow' 
   author = 'Paolo Di Tommaso'
-  nextflowVersion = '>=23.04.0'
+  nextflowVersion = '>=23.10.0'
 }
 
 /* 
@@ -34,10 +34,15 @@ profiles {
     process.container = 'quay.io/nextflow/rnaseq-nf:v1.2.1'
   }
 
+  /*
+   * NOTE: requires nextflow 24.03.0-edge or later
+   */
   wave {
     wave.enabled = true
-    wave.strategy = ['conda']
-    conda.channels = 'seqera,conda-forge,bioconda,defaults'
+    wave.strategy = 'conda'
+    wave.freeze = true
+    apptainer.ociAutoPull = true
+    singularity.ociAutoPull = true
   }
 
   docker {