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@nextstrain

Nextstrain

Real-time tracking of pathogen evolution

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  1. ncov ncov Public

    Nextstrain build for novel coronavirus SARS-CoV-2

    Python 1.4k 403

  2. augur augur Public

    Pipeline components for real-time phylodynamic analysis

    Python 270 128

  3. auspice auspice Public

    Web app for visualizing pathogen evolution

    JavaScript 296 162

Repositories

Showing 10 of 94 repositories
  • fauna Public

    RethinkDB database to support real-time virus analysis

    nextstrain/fauna’s past year of commit activity
    Python 33 AGPL-3.0 13 20 12 Updated Jan 2, 2025
  • seasonal-flu Public

    Scripts. config, and snakefiles for seasonal-flu nextstrain builds

    nextstrain/seasonal-flu’s past year of commit activity
    Python 46 27 23 0 Updated Jan 2, 2025
  • dengue Public

    Nextstrain build for dengue virus

    nextstrain/dengue’s past year of commit activity
    Python 8 11 13 (1 issue needs help) 1 Updated Jan 2, 2025
  • auspice Public

    Web app for visualizing pathogen evolution

    nextstrain/auspice’s past year of commit activity
    JavaScript 296 AGPL-3.0 162 238 (4 issues need help) 33 Updated Jan 1, 2025
  • avian-flu Public

    Nextstrain build for avian influenza viruses

    nextstrain/avian-flu’s past year of commit activity
    Python 22 8 11 8 Updated Jan 1, 2025
  • WNV Public

    the repository used to build West Nile Virus for nextstrain

    nextstrain/WNV’s past year of commit activity
    Python 3 0 8 1 Updated Jan 1, 2025
  • forecasts-viz Public
    nextstrain/forecasts-viz’s past year of commit activity
    JavaScript 1 0 2 1 Updated Dec 31, 2024
  • steampipe-plugin-github Public Forked from turbot/steampipe-plugin-github
    nextstrain/steampipe-plugin-github’s past year of commit activity
    Go 0 Apache-2.0 31 0 0 Updated Dec 31, 2024
  • mpox Public

    Nextstrain build for mpox virus

    nextstrain/mpox’s past year of commit activity
    Python 45 MIT 19 27 7 Updated Dec 30, 2024
  • augur Public

    Pipeline components for real-time phylodynamic analysis

    nextstrain/augur’s past year of commit activity
    Python 270 AGPL-3.0 128 239 (1 issue needs help) 53 Updated Dec 26, 2024
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