nf-core · maxulysse · Mar 11, 2024 · Feb 20, 2024 · Feb 20, 2024 · Mar 11, 2024
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -9,10 +9,22 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 - [#73](https://github.com/nf-core/bamtofastq/pull/73) Sync TEMPLATE with tools 2.12
 
+### `Changed`
+
+- [#74](https://github.com/nf-core/bamtofastq/pull/74) Update to samtools to v1.19.2.
+- [#76](https://github.com/nf-core/bamtofastq/pull/76) Update modules cat/fastq and samtools/view.
+
 ### `Fixed`
 
 - [#77](https://github.com/nf-core/bamtofastq/pull/77) Fix detection of paired-end or single-end for input with less than 1000 reads.
 
+### `Dependencies`
+
+| Dependency | Old version | New version |
+| ---------- | ----------- | ----------- |
+| Samtools   | 1.17        | 1.19.2      |
+| MultiQC    | 1.15        | 1.21        |
+
 ## v2.1.0 - Grace Hopper
 
 ### `Added`

diff --git a/modules.json b/modules.json
@@ -7,7 +7,7 @@
                 "nf-core": {
                     "cat/fastq": {
                         "branch": "master",
-                        "git_sha": "5c460c5a4736974abde2843294f35307ee2b0e5e",
+                        "git_sha": "02fd5bd7275abad27aad32d5c852e0a9b1b98882",
                         "installed_by": ["modules"]
                     },
                     "fastqc": {
@@ -57,7 +57,7 @@
                     },
                     "samtools/view": {
                         "branch": "master",
-                        "git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
+                        "git_sha": "0bd7d2333a88483aa0476acea172e9f5f6dd83bb",
                         "installed_by": ["modules"]
                     }
                 }

diff --git a/modules/nf-core/cat/fastq/environment.yml b/modules/nf-core/cat/fastq/environment.yml
diff --git a/modules/nf-core/cat/fastq/main.nf b/modules/nf-core/cat/fastq/main.nf
diff --git a/modules/nf-core/cat/fastq/meta.yml b/modules/nf-core/cat/fastq/meta.yml
diff --git a/modules/nf-core/cat/fastq/tests/main.nf.test b/modules/nf-core/cat/fastq/tests/main.nf.test
diff --git a/modules/nf-core/cat/fastq/tests/main.nf.test.snap b/modules/nf-core/cat/fastq/tests/main.nf.test.snap
diff --git a/modules/nf-core/cat/fastq/tests/tags.yml b/modules/nf-core/cat/fastq/tests/tags.yml
diff --git a/modules/nf-core/samtools/view/tests/main.nf.test b/modules/nf-core/samtools/view/tests/main.nf.test