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Fixes lint errors
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baldikacti committed Dec 20, 2024
1 parent 666aa36 commit ba0431b
Showing 1 changed file with 20 additions and 20 deletions.
40 changes: 20 additions & 20 deletions conf/unity.config
Original file line number Diff line number Diff line change
Expand Up @@ -6,39 +6,39 @@
*/

params {
config_profile_description = 'Unity HPC cluster profile provided by nf-core/configs.'
config_profile_contact = 'Berent Aldikacti (@baldikacti)'
config_profile_url = 'https://unity.rc.umass.edu/'
config_profile_description = 'Unity HPC cluster profile provided by nf-core/configs.'
config_profile_contact = 'Berent Aldikacti (@baldikacti)'
config_profile_url = 'https://unity.rc.umass.edu/'

igenomes_base = '/datasets/bio/igenomes'
igenomes_base = '/datasets/bio/igenomes'

max_memory = 2.TB
max_cpus = 192
max_time = 14.d
max_memory = 2.TB
max_cpus = 192
max_time = 14.d
}

process {
resourceLimits = [
cpus: 192,
memory: 2.TB,
time: 14.d
]
executor = 'slurm'
resourceLimits = [
cpus: 192,
memory: 2.TB,
time: 14.d
]
executor = 'slurm'

// Selects partition based on process time
queue = { task.time <= 2.h ? 'cpu-preempt' : 'cpu' }
clusterOptions = { "${task.time >= 48.h ? '-q long' : ''}" }
queue = { task.time <= 2.h ? 'cpu-preempt' : 'cpu' }
clusterOptions = { "${task.time >= 48.h ? '-q long' : ''}" }

maxRetries = 2
maxRetries = 2

}

// Limits job submission to 1000 consecutive run and 20 submissions per second
executor {
queueSize = 1000
submitRateLimit = '20sec'
pollInterval = '30sec'
queueStatInterval = '1min'
queueSize = 1000
submitRateLimit = '20sec'
pollInterval = '30sec'
queueStatInterval = '1min'
}

apptainer {
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