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Add germlinecnvcaller #10

Add germlinecnvcaller

Add germlinecnvcaller #10

Triggered via pull request September 10, 2023 23:28
Status Failure
Total duration 3m 37s
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ci.yml

on: pull_request
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Choose nextflow versions to test against depending on target branch
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Choose nextflow versions to test against depending on target branch
Matrix: test-dev
Matrix: test-master
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2 errors and 3 warnings
germlinecnvcaller docker NXF 23.04.0
Process completed with exit code 1.
germlinecnvcaller docker NXF 23.04.0
Process returned exit code 1 Launched as "nf-test test tests/pipeline/germlinecnvcaller.nf.test --profile "test,docker" --tap=test.tap" Launched at "/home/runner/work/createpanelrefs/createpanelrefs" Attempts exhausted, made 3 attempts : Attempt #1 started at : 23:29:11 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 23:29:13 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 23:29:14 GMT+0000 (Coordinated Universal Time)
germlinecnvcaller docker NXF 23.04.0
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
germlinecnvcaller docker NXF 23.04.0
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work. No artifacts will be uploaded.
default docker NXF 23.04.0
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected]. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/