update modules #105
ci.yml
on: pull_request
Check for changes
2s
Choose nextflow versions to test against depending on target branch
0s
Matrix: test-dev
Matrix: test-master
Annotations
6 errors and 9 warnings
cnvkit docker NXF 23.10.0
Process returned exit code 1
Launched as "nf-test test tests/pipeline/cnvkit.nf.test --profile "test,docker" --tap=test.tap"
Launched at "/home/runner/work/createpanelrefs/createpanelrefs"
Attempts exhausted, made 3 attempts :
Attempt #1 started at : 14:32:17 GMT+0000 (Coordinated Universal Time)
Attempt #2 started at : 14:33:40 GMT+0000 (Coordinated Universal Time)
Attempt #3 started at : 14:34:07 GMT+0000 (Coordinated Universal Time)
|
cnvkit docker NXF 23.10.0
Process completed with exit code 1.
|
gens_pon docker NXF 23.10.0
Process returned exit code 1
Launched as "nf-test test tests/pipeline/gens_pon.nf.test --profile "test,docker" --tap=test.tap"
Launched at "/home/runner/work/createpanelrefs/createpanelrefs"
Attempts exhausted, made 3 attempts :
Attempt #1 started at : 14:32:20 GMT+0000 (Coordinated Universal Time)
Attempt #2 started at : 14:33:36 GMT+0000 (Coordinated Universal Time)
Attempt #3 started at : 14:34:07 GMT+0000 (Coordinated Universal Time)
|
gens_pon docker NXF 23.10.0
Process completed with exit code 1.
|
germlinecnvcaller_cohort docker NXF 23.10.0
The run was canceled by @ramprasadn.
|
germlinecnvcaller_cohort docker NXF 23.10.0
The operation was canceled.
|
Check for changes
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, dorny/paths-filter@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
default docker NXF 23.10.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/[email protected], actions/cache@v3, nf-core/[email protected]. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
default docker NXF 23.10.0
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected]. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
cnvkit docker NXF 23.10.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/[email protected], actions/cache@v3, nf-core/[email protected], actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
cnvkit docker NXF 23.10.0
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
cnvkit docker NXF 23.10.0
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work. No artifacts will be uploaded.
|
gens_pon docker NXF 23.10.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/[email protected], actions/cache@v3, nf-core/[email protected], actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
gens_pon docker NXF 23.10.0
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
gens_pon docker NXF 23.10.0
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work. No artifacts will be uploaded.
|