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Include gatk4/postprocessgermlinecnvcalls #111

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Include gatk4/postprocessgermlinecnvcalls

Include gatk4/postprocessgermlinecnvcalls #111

Triggered via pull request June 11, 2024 16:12
@maxulyssemaxulysse
synchronize #27
Jorisvansteenbrugge:main
Status Failure
Total duration 46m 32s
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ci.yml

on: pull_request
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Choose nextflow versions to test against depending on target branch
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Matrix: test-dev
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2 errors and 6 warnings
germlinecnvcaller_cohort docker NXF 23.10.0
Process returned exit code 1 Launched as "nf-test test tests/pipeline/germlinecnvcaller_cohort.nf.test --profile "test,docker" --tap=test.tap" Launched at "/home/runner/work/createpanelrefs/createpanelrefs" Attempts exhausted, made 3 attempts : Attempt #1 started at : 16:15:29 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 16:31:17 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 16:45:14 GMT+0000 (Coordinated Universal Time)
germlinecnvcaller_cohort docker NXF 23.10.0
Process completed with exit code 1.
Check for changes
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, dorny/paths-filter@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
default docker NXF 23.10.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/[email protected], actions/cache@v3, nf-core/[email protected]. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
default docker NXF 23.10.0
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected]. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
germlinecnvcaller_cohort docker NXF 23.10.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: Wandalen/[email protected], actions/cache@v3, nf-core/[email protected], actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
germlinecnvcaller_cohort docker NXF 23.10.0
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
germlinecnvcaller_cohort docker NXF 23.10.0
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log /home/runner/pytest_workflow_*/*/log.out /home/runner/pytest_workflow_*/*/log.err /home/runner/pytest_workflow_*/*/work. No artifacts will be uploaded.