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fix germlinecnvcaller snapshots
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maxulysse committed Oct 11, 2024
1 parent 316dabf commit 232dcf4
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Showing 2 changed files with 25 additions and 65 deletions.
25 changes: 24 additions & 1 deletion tests/.nftignore
Original file line number Diff line number Diff line change
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*/references/genome.dict
gatk4/*.{vcf.gz,vcf.gz.tbi}
gatk4/test/*
gatk4/test/**
gens_pon/createreadcountpanelofnormals/gens_pon.hdf5
gens_pon/intervals/genome.interval_list
gens_pon/references/genome.dict
germlinecnvcaller/determinegermlinecontigploidy/cohort-model/mu_psi_j_log__.tsv
germlinecnvcaller/determinegermlinecontigploidy/cohort-model/std_psi_j_log__.tsv
germlinecnvcaller/germlinecnvcaller/{1,2}scattered-cnv-model/{1,2}scattered-calls/*/log_c_emission_tc.tsv
germlinecnvcaller/germlinecnvcaller/{1,2}scattered-cnv-model/{1,2}scattered-calls/*/log_q_c_tc.tsv
germlinecnvcaller/germlinecnvcaller/{1,2}scattered-cnv-model/{1,2}scattered-calls/*/mu_denoised_copy_ratio_t.tsv
germlinecnvcaller/germlinecnvcaller/{1,2}scattered-cnv-model/{1,2}scattered-calls/*/mu_psi_s_log__.tsv
germlinecnvcaller/germlinecnvcaller/{1,2}scattered-cnv-model/{1,2}scattered-calls/*/mu_read_depth_s_log__.tsv
germlinecnvcaller/germlinecnvcaller/{1,2}scattered-cnv-model/{1,2}scattered-calls/*/mu_z_su.tsv
germlinecnvcaller/germlinecnvcaller/{1,2}scattered-cnv-model/{1,2}scattered-calls/*/std_denoised_copy_ratio_t.tsv
germlinecnvcaller/germlinecnvcaller/{1,2}scattered-cnv-model/{1,2}scattered-calls/*/std_psi_s_log__.tsv
germlinecnvcaller/germlinecnvcaller/{1,2}scattered-cnv-model/{1,2}scattered-calls/*/std_read_depth_s_log__.tsv
germlinecnvcaller/germlinecnvcaller/{1,2}scattered-cnv-model/{1,2}scattered-calls/*/std_z_su.tsv
germlinecnvcaller/germlinecnvcaller/{1,2}scattered-cnv-model/{1,2}scattered-model
germlinecnvcaller/germlinecnvcaller/{1,2}scattered-cnv-model/{1,2}scattered-model/log_q_tau_tk.tsv
germlinecnvcaller/germlinecnvcaller/{1,2}scattered-cnv-model/{1,2}scattered-model/mu_W_tu.tsv
germlinecnvcaller/germlinecnvcaller/{1,2}scattered-cnv-model/{1,2}scattered-model/mu_ard_u_log__.tsv
germlinecnvcaller/germlinecnvcaller/{1,2}scattered-cnv-model/{1,2}scattered-model/mu_log_mean_bias_t.tsv
germlinecnvcaller/germlinecnvcaller/{1,2}scattered-cnv-model/{1,2}scattered-model/mu_psi_t_log__.tsv
germlinecnvcaller/germlinecnvcaller/{1,2}scattered-cnv-model/{1,2}scattered-model/std_W_tu.tsv
germlinecnvcaller/germlinecnvcaller/{1,2}scattered-cnv-model/{1,2}scattered-model/std_ard_u_log__.tsv
germlinecnvcaller/germlinecnvcaller/{1,2}scattered-cnv-model/{1,2}scattered-model/std_log_mean_bias_t.tsv
germlinecnvcaller/germlinecnvcaller/{1,2}scattered-cnv-model/{1,2}scattered-model/std_psi_t_log__.tsv
germlinecnvcaller/readcounts/*.hdf5
multiqc/multiqc_data/multiqc.log
multiqc/multiqc_data/multiqc_data.json
multiqc/multiqc_data/multiqc_general_stats.txt
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65 changes: 1 addition & 64 deletions tests/germlinecnvcaller_cohort.nf.test.snap

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