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Update CNVkit/batch #9

Merged
merged 3 commits into from
Sep 6, 2023
Merged

Update CNVkit/batch #9

merged 3 commits into from
Sep 6, 2023

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ramprasadn
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PR checklist

This PR updates cnvkit/batch module, and refactors input channel logic to allow easy addition of more subworkflows in the future.

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/createpanelrefs branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@ramprasadn ramprasadn marked this pull request as ready for review September 6, 2023 08:44
@maxulysse maxulysse merged commit 7fb1753 into nf-core:dev Sep 6, 2023
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@maxulysse maxulysse maxulysse approved these changes

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@ramprasadn @maxulysse