Merge pull request #210 from luslab/dev #558

Run time

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Job	Run time
Run standard pipeline test (edge version)	7m 52s
Run extended pipeline test (23.04.0)	17m 52s
Run standard pipeline test (23.04.0)	9m 51s
Run extended pipeline test	17m 27s
Run standard pipeline test	9m 35s
23.04.0 test_genome_options	4m 36s
23.04.0 test_genome_options_spikein	8m 5s
23.04.0 test_samplesheet	14m 17s
23.04.0 test_samplesheet_2	3m 0s
23.04.0 test_samplesheet_3	1m 7s
23.04.0 test_filtering_noqfilter	4m 48s
23.04.0 test_filtering_withqfilter	4m 59s
23.04.0 test_bam_scale_none	3m 15s
23.04.0 test_bam_scale_spikein	3m 28s
23.04.0 test_bam_scale_cpm	4m 1s
23.04.0 test_bam_scale_rpkm	4m 21s
23.04.0 test_bam_scale_bpm	3m 45s
23.04.0 test_bam_scale_cpm_iggscale	3m 52s
23.04.0 test_peak_callers_seacr	6m 46s
23.04.0 test_peak_callers_macs2	11m 29s
23.04.0 test_peak_callers_invalid	47s
23.04.0 test_peak_callers_seacr_macs2	4m 20s
23.04.0 test_peak_callers_macs2_seacr	3m 54s
23.04.0 test_peak_callers_seacr_macs2_noigg	3m 16s
23.04.0 test_peak_callers_ctrl_tests	8m 38s
23.04.0 test_consensus_peaks_group	7m 6s
23.04.0 test_consensus_peaks_all	7m 4s
23.04.0 test_consensus_peaks_invalid	38s
23.04.0 verify_output_only_input	1m 10s
23.04.0 verify_output_save_merged	1m 53s
23.04.0 verify_output_save_trimmed	1m 52s
23.04.0 verify_output_skip_trimming	1m 12s
23.04.0 verify_output_skip_fastqc	1m 31s
23.04.0 verify_output_save_ref	1m 22s
23.04.0 verify_output_align_only_align	3m 25s
23.04.0 verify_output_align_only_align_end_to_end	2m 22s
23.04.0 verify_output_align_only_align_local	2m 10s
23.04.0 verify_output_align_intermed	4m 18s
23.04.0 verify_output_align_save_spikein_align	2m 18s
23.04.0 verify_output_align_save_unaligned	2m 39s
23.04.0 verify_output_align_duplicates_mark	3m 45s
23.04.0 verify_output_align_duplicates_remove	5m 49s
23.04.0 verify_output_align_duplicates_remove_target	4m 11s
23.04.0 verify_output_align_linear_duplicates_remove	4m 14s
23.04.0 verify_output_align_linear_duplicates_remove_target	4m 34s
23.04.0 verify_output_only_filtering	7m 29s
23.04.0 verify_output_only_filtering_with_mitochondrial_reads	4m 24s
23.04.0 verify_output_only_filtering_without_mitochondrial_reads	3m 53s
23.04.0 verify_output_only_filtering_without_mitochondrial_reads_mito_name_null	4m 15s
23.04.0 verify_output_peak_calling_only_peak_calling	7m 39s
23.04.0 verify_output_reporting_skip_preseq_false	6m 40s
23.04.0 verify_output_reporting_skip_preseq_true	5m 49s
23.04.0 verify_output_reporting_skip_dtqc_false	16m 43s
23.04.0 verify_output_reporting_skip_dtqc_true	20m 34s
23.04.0 verify_output_reporting_skip_heatmaps_false	9m 32s
23.04.0 verify_output_reporting_skip_heatmaps_true	5m 54s
23.04.0 verify_output_reporting_skip_heatmaps_grouped	6m 27s
23.04.0 verify_output_reporting_skip_igv_false	7m 3s
23.04.0 verify_output_reporting_skip_igv_true	6m 47s
23.04.0 verify_output_reporting_skip_multiqc_false	9m 31s
23.04.0 verify_output_reporting_skip_multiqc_true	9m 12s
23.04.0 verify_output_reporting_skip_peak_qc_false	7m 33s
23.04.0 verify_output_reporting_skip_peak_qc_true	7m 55s
23.04.0 verify_output_reporting_skip_reporting	4m 13s
test_genome_options	4m 54s
test_genome_options_spikein	8m 15s
test_samplesheet	16m 29s
test_samplesheet_2	3m 51s
test_samplesheet_3	56s
test_filtering_noqfilter	4m 40s
test_filtering_withqfilter	4m 56s
test_bam_scale_none	3m 51s
test_bam_scale_spikein	3m 49s
test_bam_scale_cpm	3m 51s
test_bam_scale_rpkm	4m 2s
test_bam_scale_bpm	3m 53s
test_bam_scale_cpm_iggscale	3m 38s
test_peak_callers_seacr	9m 6s
test_peak_callers_macs2	13m 39s
test_peak_callers_invalid	51s
test_peak_callers_seacr_macs2	4m 15s
test_peak_callers_macs2_seacr	4m 0s
test_peak_callers_seacr_macs2_noigg	3m 52s
test_peak_callers_ctrl_tests	9m 23s
test_consensus_peaks_group	6m 53s
test_consensus_peaks_all	6m 49s
test_consensus_peaks_invalid	30s
verify_output_only_input	1m 2s
verify_output_save_merged	1m 46s
verify_output_save_trimmed	1m 52s
verify_output_skip_trimming	1m 20s
verify_output_skip_fastqc	1m 31s
verify_output_save_ref	1m 19s
verify_output_align_only_align	3m 20s
verify_output_align_only_align_end_to_end	2m 27s
verify_output_align_only_align_local	2m 25s
verify_output_align_intermed	4m 9s
verify_output_align_save_spikein_align	2m 12s
verify_output_align_save_unaligned	2m 27s
verify_output_align_duplicates_mark	3m 29s
verify_output_align_duplicates_remove	4m 28s
verify_output_align_duplicates_remove_target	4m 42s
verify_output_align_linear_duplicates_remove	4m 30s
verify_output_align_linear_duplicates_remove_target	4m 48s
verify_output_only_filtering	7m 46s
verify_output_only_filtering_with_mitochondrial_reads	4m 49s
verify_output_only_filtering_without_mitochondrial_reads	3m 46s
verify_output_only_filtering_without_mitochondrial_reads_mito_name_null	3m 30s
verify_output_peak_calling_only_peak_calling	7m 55s
verify_output_reporting_skip_preseq_false	5m 35s
verify_output_reporting_skip_preseq_true	7m 20s
verify_output_reporting_skip_dtqc_false	17m 48s
verify_output_reporting_skip_dtqc_true	18m 16s
verify_output_reporting_skip_heatmaps_false	10m 12s
verify_output_reporting_skip_heatmaps_true	5m 35s
verify_output_reporting_skip_heatmaps_grouped	6m 12s
verify_output_reporting_skip_igv_false	8m 56s
verify_output_reporting_skip_igv_true	6m 59s
verify_output_reporting_skip_multiqc_false	9m 32s
verify_output_reporting_skip_multiqc_true	7m 11s
verify_output_reporting_skip_peak_qc_false	10m 55s
verify_output_reporting_skip_peak_qc_true	7m 53s
verify_output_reporting_skip_reporting	4m 15s
	11h 49m 2s

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Merge pull request #210 from luslab/dev #558

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Merge pull request #210 from luslab/dev #558

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