3.2.1 Release Candidiate #559

Run time

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Job	Run time
Run extended pipeline test (23.04.0)	22m 38s
Run standard pipeline test (edge version)	8m 22s
Run standard pipeline test (23.04.0)	8m 18s
Run extended pipeline test	17m 43s
Run standard pipeline test	8m 4s
23.04.0 test_genome_options	4m 58s
23.04.0 test_genome_options_spikein	8m 30s
23.04.0 test_samplesheet	14m 45s
23.04.0 test_samplesheet_2	2m 59s
23.04.0 test_samplesheet_3	1m 7s
23.04.0 test_filtering_noqfilter	4m 35s
23.04.0 test_filtering_withqfilter	5m 42s
23.04.0 test_bam_scale_none	3m 26s
23.04.0 test_bam_scale_spikein	3m 46s
23.04.0 test_bam_scale_cpm	3m 49s
23.04.0 test_bam_scale_rpkm	3m 35s
23.04.0 test_bam_scale_bpm	3m 57s
23.04.0 test_bam_scale_cpm_iggscale	4m 9s
23.04.0 test_peak_callers_seacr	6m 45s
23.04.0 test_peak_callers_macs2	11m 18s
23.04.0 test_peak_callers_invalid	39s
23.04.0 test_peak_callers_seacr_macs2	3m 59s
23.04.0 test_peak_callers_macs2_seacr	3m 53s
23.04.0 test_peak_callers_seacr_macs2_noigg	3m 17s
23.04.0 test_peak_callers_ctrl_tests	9m 13s
23.04.0 test_consensus_peaks_group	6m 51s
23.04.0 test_consensus_peaks_all	8m 9s
23.04.0 test_consensus_peaks_invalid	37s
23.04.0 verify_output_only_input	1m 2s
23.04.0 verify_output_save_merged	1m 51s
23.04.0 verify_output_save_trimmed	1m 59s
23.04.0 verify_output_skip_trimming	1m 19s
23.04.0 verify_output_skip_fastqc	1m 42s
23.04.0 verify_output_save_ref	1m 28s
23.04.0 verify_output_align_only_align	4m 9s
23.04.0 verify_output_align_only_align_end_to_end	2m 47s
23.04.0 verify_output_align_only_align_local	2m 49s
23.04.0 verify_output_align_intermed	4m 9s
23.04.0 verify_output_align_save_spikein_align	2m 17s
23.04.0 verify_output_align_save_unaligned	2m 27s
23.04.0 verify_output_align_duplicates_mark	3m 56s
23.04.0 verify_output_align_duplicates_remove	6m 8s
23.04.0 verify_output_align_duplicates_remove_target	5m 25s
23.04.0 verify_output_align_linear_duplicates_remove	6m 11s
23.04.0 verify_output_align_linear_duplicates_remove_target	4m 31s
23.04.0 verify_output_only_filtering	8m 49s
23.04.0 verify_output_only_filtering_with_mitochondrial_reads	5m 13s
23.04.0 verify_output_only_filtering_without_mitochondrial_reads	3m 38s
23.04.0 verify_output_only_filtering_without_mitochondrial_reads_mito_name_null	3m 35s
23.04.0 verify_output_peak_calling_only_peak_calling	7m 57s
23.04.0 verify_output_reporting_skip_preseq_false	6m 26s
23.04.0 verify_output_reporting_skip_preseq_true	5m 39s
23.04.0 verify_output_reporting_skip_dtqc_false	20m 13s
23.04.0 verify_output_reporting_skip_dtqc_true	15m 0s
23.04.0 verify_output_reporting_skip_heatmaps_false	8m 9s
23.04.0 verify_output_reporting_skip_heatmaps_true	5m 27s
23.04.0 verify_output_reporting_skip_heatmaps_grouped	6m 17s
23.04.0 verify_output_reporting_skip_igv_false	8m 23s
23.04.0 verify_output_reporting_skip_igv_true	7m 16s
23.04.0 verify_output_reporting_skip_multiqc_false	8m 55s
23.04.0 verify_output_reporting_skip_multiqc_true	6m 48s
23.04.0 verify_output_reporting_skip_peak_qc_false	7m 38s
23.04.0 verify_output_reporting_skip_peak_qc_true	7m 59s
23.04.0 verify_output_reporting_skip_reporting	4m 11s
test_genome_options	4m 45s
test_genome_options_spikein	12m 0s
test_samplesheet	14m 53s
test_samplesheet_2	3m 4s
test_samplesheet_3	54s
test_filtering_noqfilter	5m 48s
test_filtering_withqfilter	5m 56s
test_bam_scale_none	3m 59s
test_bam_scale_spikein	4m 54s
test_bam_scale_cpm	3m 51s
test_bam_scale_rpkm	4m 40s
test_bam_scale_bpm	3m 43s
test_bam_scale_cpm_iggscale	4m 1s
test_peak_callers_seacr	8m 38s
test_peak_callers_macs2	11m 44s
test_peak_callers_invalid	48s
test_peak_callers_seacr_macs2	4m 15s
test_peak_callers_macs2_seacr	4m 37s
test_peak_callers_seacr_macs2_noigg	4m 5s
test_peak_callers_ctrl_tests	10m 43s
test_consensus_peaks_group	6m 47s
test_consensus_peaks_all	6m 44s
test_consensus_peaks_invalid	34s
verify_output_only_input	1m 26s
verify_output_save_merged	2m 18s
verify_output_save_trimmed	2m 16s
verify_output_skip_trimming	1m 24s
verify_output_skip_fastqc	1m 29s
verify_output_save_ref	1m 32s
verify_output_align_only_align	3m 43s
verify_output_align_only_align_end_to_end	2m 34s
verify_output_align_only_align_local	2m 19s
verify_output_align_intermed	4m 22s
verify_output_align_save_spikein_align	2m 31s
verify_output_align_save_unaligned	2m 35s
verify_output_align_duplicates_mark	3m 54s
verify_output_align_duplicates_remove	5m 22s
verify_output_align_duplicates_remove_target	4m 30s
verify_output_align_linear_duplicates_remove	4m 30s
verify_output_align_linear_duplicates_remove_target	4m 48s
verify_output_only_filtering	7m 31s
verify_output_only_filtering_with_mitochondrial_reads	3m 41s
verify_output_only_filtering_without_mitochondrial_reads	3m 39s
verify_output_only_filtering_without_mitochondrial_reads_mito_name_null	4m 20s
verify_output_peak_calling_only_peak_calling	9m 56s
verify_output_reporting_skip_preseq_false	6m 52s
verify_output_reporting_skip_preseq_true	5m 51s
verify_output_reporting_skip_dtqc_false	16m 0s
verify_output_reporting_skip_dtqc_true	14m 42s
verify_output_reporting_skip_heatmaps_false	6m 52s
verify_output_reporting_skip_heatmaps_true	5m 1s
verify_output_reporting_skip_heatmaps_grouped	7m 34s
verify_output_reporting_skip_igv_false	7m 28s
verify_output_reporting_skip_igv_true	7m 28s
verify_output_reporting_skip_multiqc_false	7m 44s
verify_output_reporting_skip_multiqc_true	8m 34s
verify_output_reporting_skip_peak_qc_false	9m 32s
verify_output_reporting_skip_peak_qc_true	7m 40s
verify_output_reporting_skip_reporting	4m 14s
	11h 54m 22s

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3.2.1 Release Candidiate #559

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3.2.1 Release Candidiate #559

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