nf-core CI

Updates #569

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Triggered via pull request November 11, 2023 13:45

synchronize #217

luslab:dev

Status Failure

Total duration 46m 49s

Artifacts 1

ci.yml

on: pull_request

Run standard pipeline test (edge version)

Matrix: Run standard pipeline test

Matrix: Run extended pipeline test

Matrix: unit_tests

Annotations

2 errors and 125 warnings

23.04.0 test_peak_callers_ctrl_tests

Process returned exit code 1 Launched as "TMPDIR=~ PROFILE=docker pytest --tag test_peak_callers_ctrl_tests --symlink --kwdof --color=yes" Launched at "/home/runner/work/cutandrun/cutandrun" Attempts exhausted, made 3 attempts : Attempt #1 started at : 13:46:22 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 13:51:05 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 13:54:56 GMT+0000 (Coordinated Universal Time)

test_peak_callers_ctrl_tests

Process returned exit code 1 Launched as "TMPDIR=~ PROFILE=docker pytest --tag test_peak_callers_ctrl_tests --symlink --kwdof --color=yes" Launched at "/home/runner/work/cutandrun/cutandrun" Attempts exhausted, made 3 attempts : Attempt #1 started at : 13:49:22 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 13:54:01 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 13:57:50 GMT+0000 (Coordinated Universal Time)

23.04.0 test_consensus_peaks_invalid

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 test_peak_callers_invalid

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 test_samplesheet_3

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 verify_output_only_input

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 verify_output_save_ref

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 verify_output_align_only_align_local

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 verify_output_align_save_spikein_align

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 verify_output_skip_fastqc

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 test_peak_callers_macs2_seacr

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 verify_output_save_trimmed

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 test_bam_scale_spikein

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 test_bam_scale_rpkm

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 test_bam_scale_bpm

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 test_bam_scale_cpm_iggscale

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 verify_output_align_intermed

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 verify_output_align_only_align_end_to_end

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 verify_output_align_linear_duplicates_remove

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 verify_output_align_linear_duplicates_remove_target

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 test_filtering_noqfilter

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 verify_output_skip_trimming

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 test_bam_scale_none

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 test_peak_callers_seacr_macs2

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 verify_output_align_duplicates_remove

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 verify_output_align_only_align

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 test_samplesheet_2

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 verify_output_reporting_skip_preseq_true

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

test_consensus_peaks_invalid

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

test_peak_callers_invalid

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 test_peak_callers_seacr_macs2_noigg

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 verify_output_align_duplicates_mark

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 verify_output_only_filtering_without_mitochondrial_reads

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 verify_output_only_filtering_with_mitochondrial_reads

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 verify_output_save_merged

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 verify_output_align_save_unaligned

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 verify_output_reporting_skip_reporting

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 verify_output_reporting_skip_multiqc_true

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 verify_output_reporting_skip_igv_false

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

test_bam_scale_cpm_iggscale

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 test_bam_scale_cpm

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

test_samplesheet_3

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 test_genome_options

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 verify_output_reporting_skip_peak_qc_true

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 verify_output_only_filtering

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 verify_output_align_duplicates_remove_target

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 verify_output_only_filtering_without_mitochondrial_reads_mito_name_null

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

Run standard pipeline test (edge version)

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected]. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 test_filtering_withqfilter

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

test_bam_scale_rpkm

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 test_genome_options_spikein

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

test_bam_scale_cpm

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

test_peak_callers_macs2_seacr

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

test_bam_scale_none

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

test_peak_callers_seacr_macs2

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

test_genome_options

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

test_samplesheet_2

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

verify_output_align_only_align_local

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 verify_output_reporting_skip_heatmaps_grouped

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

verify_output_align_save_unaligned

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

test_bam_scale_bpm

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

verify_output_only_input

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 test_peak_callers_macs2

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

verify_output_align_duplicates_remove

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

verify_output_align_save_spikein_align

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

verify_output_align_duplicates_remove_target

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

verify_output_align_intermed

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 test_peak_callers_seacr

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 verify_output_reporting_skip_heatmaps_true

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

verify_output_align_only_align

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 test_consensus_peaks_all

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

verify_output_only_filtering_with_mitochondrial_reads

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

verify_output_only_filtering_without_mitochondrial_reads

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

test_peak_callers_seacr_macs2_noigg

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 test_consensus_peaks_group

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

test_consensus_peaks_all

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

verify_output_align_only_align_end_to_end

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

test_consensus_peaks_group

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

verify_output_only_filtering_without_mitochondrial_reads_mito_name_null

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

verify_output_save_ref

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 verify_output_reporting_skip_preseq_false

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 verify_output_reporting_skip_heatmaps_false

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

test_bam_scale_spikein

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

test_filtering_withqfilter

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

verify_output_align_duplicates_mark

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

verify_output_skip_trimming

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 verify_output_peak_calling_only_peak_calling

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

verify_output_save_merged

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

verify_output_save_trimmed

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 verify_output_reporting_skip_igv_true

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

test_filtering_noqfilter

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

verify_output_align_linear_duplicates_remove_target

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

verify_output_skip_fastqc

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

Run standard pipeline test (23.04.0)

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected]. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

verify_output_reporting_skip_heatmaps_true

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

Run standard pipeline test

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected]. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

verify_output_reporting_skip_multiqc_false

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 verify_output_reporting_skip_dtqc_true

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 test_samplesheet

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

verify_output_reporting_skip_peak_qc_false

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

verify_output_reporting_skip_preseq_false

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

verify_output_align_linear_duplicates_remove

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 verify_output_reporting_skip_peak_qc_false

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

verify_output_only_filtering

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

test_peak_callers_seacr

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

verify_output_reporting_skip_igv_false

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 verify_output_reporting_skip_multiqc_false

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

verify_output_reporting_skip_igv_true

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

Run extended pipeline test (23.04.0)

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected]. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

verify_output_reporting_skip_reporting

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

Run extended pipeline test

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected]. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

test_genome_options_spikein

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

verify_output_reporting_skip_multiqc_true

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

verify_output_reporting_skip_preseq_true

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

verify_output_reporting_skip_heatmaps_grouped

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

verify_output_peak_calling_only_peak_calling

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

verify_output_reporting_skip_peak_qc_true

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

test_peak_callers_macs2

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

verify_output_reporting_skip_heatmaps_false

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

verify_output_reporting_skip_dtqc_false

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

verify_output_reporting_skip_dtqc_true

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 verify_output_reporting_skip_dtqc_false

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

test_samplesheet

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 test_peak_callers_ctrl_tests

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2, actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

23.04.0 test_peak_callers_ctrl_tests

There are over 10,000 files in this artifact, consider creating an archive before upload to improve the upload performance.

test_peak_callers_ctrl_tests

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/setup-python@v2, actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

test_peak_callers_ctrl_tests

There are over 10,000 files in this artifact, consider creating an archive before upload to improve the upload performance.

Artifacts

Produced during runtime

Name	Size
logs-unit-tests Expired	30.3 GB